Evidence map›Paper›PMID 22252456›Full record

ArticleThe Journal of comparative neurology2012

Genomics of mature and immature olfactory sensory neurons.

Melissa D Nickell, Patrick Breheny, Arnold J Stromberg, Timothy S McClintock

Open access · greenAbstract read
In one paragraph

Article in The Journal of comparative neurology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 50 papers.

0numbers the graph read from it
0cells of the map it votes in
50citing papers in PubMed
2.5field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

50 citing papers in PubMed, 70 citations in OpenAlex.

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  17. Anosmia in COVID-19: Underlying Mechanisms and Assessment of an Olfactory Route to Brain Infection.The Neuroscientist : a review journal bringing neurobiology, neurology and psychiatry · 2021
    Review
  18. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Melissa D NickellDepartment of Physiology, University of Kentucky, Lexington, Kentucky 40536-0298, USA.
Patrick Breheny
Arnold J Stromberg
Timothy S McClintock
University of Kentucky · US

Funding

FUNCTIONAL DOMAINS AND EXPRESSION OF OLFACTORY RECEPTORSR01DC002736 · NIDCD · UNIVERSITY OF KENTUCKY · PI MCCLINTOCK, TIMOTHY S · 1995 to 2010
$3.1M
Genomics of Olfactory RegenerationR01DC007194 · NIDCD · UNIVERSITY OF KENTUCKY · PI MCCLINTOCK, TIMOTHY S · 2006 to 2010
$1.7M
DIFFERENTIALLY EXPRESSED GENES IN OLFACTORY NEUROGENESISR21DC004507 · NIDCD · UNIVERSITY OF KENTUCKY · PI MCCLINTOCK, TIMOTHY S · 2000 to 2001
$145k
NIDCD NIH HHS DC002736NIDCD NIH HHS R01 DC002736NIDCD NIH HHS R01 DC007194NIDCD NIH HHS R21 DC004507
6 · The paper itself

Abstract

The continuous replacement of neurons in the olfactory epithelium provides an advantageous model for investigating neuronal differentiation and maturation. By calculating the relative enrichment of every mRNA detected in samples of mature mouse olfactory sensory neurons (OSNs), immature OSNs, and the residual population of neighboring cell types, and then comparing these ratios against the known expression patterns of >300 genes, enrichment criteria that accurately predicted the OSN expression patterns of nearly all genes were determined. We identified 847 immature OSN-specific and 691 mature OSN-specific genes. The control of gene expression by chromatin modification and transcription factors, and neurite growth, protein transport, RNA processing, cholesterol biosynthesis, and apoptosis via death domain receptors, were overrepresented biological processes in immature OSNs. Ion transport (ion channels), presynaptic functions, and cilia-specific processes were overrepresented in mature OSNs. Processes overrepresented among the genes expressed by all OSNs were protein and ion transport, ER overload response, protein catabolism, and the electron transport chain. To more accurately represent gradations in mRNA abundance and identify all genes expressed in each cell type, classification methods were used to produce probabilities of expression in each cell type for every gene. These probabilities, which identified 9,300 genes expressed in OSNs, were 96% accurate at identifying genes expressed in OSNs and 86% accurate at discriminating genes specific to mature and immature OSNs. This OSN gene database not only predicts the genes responsible for the major biological processes active in OSNs, but also identifies thousands of never before studied genes that support OSN phenotypes.

Indexed as

AnimalsCell DifferentiationGenomicsMiceMice, Inbred C57BLMice, TransgenicNeurogenesisOlfactory MucosaOlfactory Receptor NeuronsTranscriptome

Identifiers

PMID22252456
PMCPMC4023872
OpenAlexW1963753120

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.