Evidence map›Paper›PMID 22252316›Full record

ArticleMolecular and cellular biology2012

Dynamic loss of H2B ubiquitylation without corresponding changes in H3K4 trimethylation during myogenic differentiation.

Vasupradha Vethantham, Yan Yang, Christopher Bowman, Patrik Asp, Jeong-Heon Lee, David G Skalnik, Brian D Dynlacht

Open access · bronzeAbstract read
In one paragraph

Article in Molecular and cellular biology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
3.4field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 61 citations in OpenAlex.

  1. Decoding RNF20: an epigenetic modifier and beyond.Frontiers in cell and developmental biology · 2026
    Review
  2. Article
  3. Article
  4. Histone H2B ubiquitylation: Connections to transcription and effects on chromatin structure.Biochimica et biophysica acta. Gene regulatory mechanisms · 2024
    Review
  5. Article
  6. Article
  7. Review
  8. Review
  9. Article
  10. Article
  11. Article
  12. USP38 Couples Histone Ubiquitination and Methylation via KDM5B to Resolve Inflammation.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2020
    Article
  13. Understanding the interplay between CpG island-associated gene promoters and H3K4 methylation.Biochimica et biophysica acta. Gene regulatory mechanisms · 2020
    Review
  14. Insights on the regulation of the MLL/SET1 family histone methyltransferases.Biochimica et biophysica acta. Gene regulatory mechanisms · 2020
    Review
  15. Article
  16. Article
  17. Paf1C regulates RNA polymerase II progression by modulating elongation rate.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  18. Article
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Vasupradha VethanthamDepartment of Pathology and Cancer Institute, Smilow Research Center, New York University School of Medicine, New York, New York, USA.
Yan Yang
Christopher Bowman
Patrik Asp
Jeong-Heon Lee
David G Skalnik
Brian D Dynlacht
New York University · USIndiana University – Purdue University Indianapolis · USIndiana University School of Medicine

Funding

Role of the pRB family in Quiescence and DifferentiationR01GM067132 · NIGMS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI DYNLACHT, BRIAN D · 2003 to 2015
$4.7M
TRANSCRIPTIONAL REGULATION BY THE PRB PROTEIN FAMILYR01CA077245 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI DYNLACHT, BRIAN D · 1998 to 2014
$4.1M
NCI NIH HHS 5R01CA077245NCI NIH HHS R01 CA077245NIGMS NIH HHS R01 GM067132NIGMS NIH HHS R01GM067132
6 · The paper itself

Abstract

Ubiquitylation of H2B on lysine 120 (H2Bub) is associated with active transcriptional elongation. H2Bub has been implicated in histone cross talk and is generally regarded to be a prerequisite for trimethylation of histone 3 lysine 4 (H3K4me3) and H3K79 in both yeast and mammalian cells. We performed a genome-wide analysis of epigenetic marks during muscle differentiation, and strikingly, we observed a near-complete loss of H2Bub in the differentiated state. We examined the basis for global loss of this mark and found that the H2B ubiquitin E3 ligase, RNF20, was depleted from chromatin in differentiated myotubes, indicating that recruitment of this protein to genes substantially decreases upon differentiation. Remarkably, during the course of myogenic differentiation, we observed retention and acquisition of H3K4 trimethylation on a large number of genes in the absence of detectable H2Bub. The Set1 H3K4 trimethylase complex was efficiently recruited to a subset of genes in myotubes in the absence of detectable H2Bub, accounting in part for H3K4 trimethylation in myotubes. Our studies suggest that H3K4me3 deposition in the absence of detectable H2Bub in myotubes is mediated via Set1 and, perhaps, MLL complexes, whose recruitment does not require H2Bub. Thus, muscle cells represent a novel setting in which to explore mechanisms that regulate histone cross talk.

Indexed as

Muscle DevelopmentUbiquitinationAnimalsCell DifferentiationCell LineChromatinChromatin ImmunoprecipitationChromosomal Proteins, Non-HistoneDown-RegulationGene DeletionGene Expression Regulation, DevelopmentalHistonesMethylationMiceMuscle Fibers, SkeletalMyoblastsChromatinChromosomal Proteins, Non-HistoneHistonesRNF20 protein, mouseTranscriptional Elongation FactorsUbiquitin-Protein LigasesWdr82 protein, mouse

Identifiers

PMID22252316
PMCPMC3295016
OpenAlexW2145763664

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.