Evidence map›Paper›PMID 22251166›Full record

ArticleDNA and cell biology2012

Contribution of the OBSCN nonsynonymous variants to aspirin exacerbated respiratory disease susceptibility in Korean population.

Jeong-Hyun Kim, Byung-Lae Park, Charisse Flerida A Pasaje, Yongha Kim, Joon Seol Bae, Jong Sook Park, Soo-Taek Uh, Yong-Hoon Kim, Mi-Kyeong Kim, Inseon S Choi and 5 more

Abstract read
In one paragraph

Article in DNA and cell biology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.5field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 7 citations in OpenAlex.

  1. Review
  2. Unraveling obscurins in heart disease.Pflugers Archiv : European journal of physiology · 2019
    Review
  3. Article
  4. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 8 institutions in 1 country.

Jeong-Hyun KimDepartment of Life Science, Sogang University, Seoul, Republic of Korea.
Byung-Lae Park
Charisse Flerida A Pasaje
Yongha Kim
Joon Seol Bae
Jong Sook Park
Soo-Taek Uh
Yong-Hoon Kim
Mi-Kyeong Kim
Inseon S Choi
Sang Heon Cho
Byoung Whui Choi
InSong Koh
Choon-Sik Park
Hyoung Doo Shin
Sogang University · KRSoonchunhyang University · KRChonnam National University · KRChung-Ang University Hospital · KRChungbuk National University · KRHanyang University · KRSeoul National University · KRSNP Genetics (South Korea) · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Airway remodeling and exacerbated airway narrowing in asthma have been attributed to the regulation of intracellular Ca(2+) by sarcoplasmic reticulum (SR) of the airway smooth muscle cells. The protein encoded by obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF (OBSCN) is a crucial factor in determining the SR architecture in Obscn(-/-) mice. This study genotyped a total of 55 common single-nucleotide polymorphisms (SNPs) in 592 Korean asthmatics including 163 aspirin exacerbated respiratory disease (AERD) cases and 429 aspirin-tolerant asthma (ATA) controls. Eight SNPs, including two nonsynonymous polymorphisms rs1188722C>T (Leu2116Phe) and rs1188729G>C (Cys4642Ser), and one haplotype BL2_ht1 showed statistically significant associations with AERD development (p=0.003-0.03). Two variants, rs1188722C>T (Leu2116Phe) and rs369252C>A, also revealed nominal association with FEV1 decline by aspirin provocation in asthmatics (p=0.03-0.04). Intriguingly, rs1188722C>T (Leu2116Phe) is a highly conserved amino acid residue among species, suggesting its functional relevance to AERD. In addition, the A allele of rs369252C>A, which was more prevalent in AERD than in ATA, was predicted as a potential branch point (BP) site for alternative splicing (BP score=4.29). Although further functional evaluation is required, our findings suggest that OBSCN polymorphisms, in particular, highly conserved nonsynonymous Leu2116Phe variant, might contribute to aspirin hypersensitivity in asthmatics.

Indexed as

Polymorphism, Single NucleotideAdolescentAdultAgedAmino Acid SequenceAnimalsAsian PeopleAsthma, Aspirin-InducedBase SequenceComputational BiologyFemaleForced Expiratory VolumeGenetic Predisposition to DiseaseGuanine Nucleotide Exchange FactorsHaplotypesHumansGuanine Nucleotide Exchange FactorsMuscle ProteinsOBSCN protein, humanProtein Serine-Threonine KinasesRho Guanine Nucleotide Exchange Factors

Identifiers

PMID22251166
PMCPMC3378958
OpenAlexW2055419372

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.