Evidence map›Paper›PMID 22248237›Full record

ArticleBMC molecular biology2012

The double-stranded break-forming activity of plant SPO11s and a novel rice SPO11 revealed by a Drosophila bioassay.

Yoshinori Shingu, Takeshi Tokai, Yasuo Agawa, Kentaro Toyota, Selina Ahamed, Makiko Kawagishi-Kobayashi, Akira Komatsu, Tsutomu Mikawa, Masa-Toshi Yamamoto, Kyo Wakasa and 2 more

Open access · hybridAbstract read
In one paragraph

Article in BMC molecular biology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 29 citations in OpenAlex.

  1. Crossover interference mechanism: New lessons from plants.Frontiers in cell and developmental biology · 2023
    Review
  2. Article
  3. Article
  4. Engineering meiotic recombination pathways in rice.Plant biotechnology journal · 2019
    Review
  5. Review
  6. Article
  7. Article
  8. Article
  9. The splicing fate of plant SPO11 genes.Frontiers in plant science · 2014
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 1 country.

Yoshinori ShinguCellular & Molecular Biology Laboratory, RIKEN Advanced Science Institute, 2-1 Hirosawa, Wako, Saitama 351-0198, Japan.
Takeshi Tokai
Yasuo Agawa
Kentaro Toyota
Selina Ahamed
Makiko Kawagishi-Kobayashi
Akira Komatsu
Tsutomu Mikawa
Masa-Toshi Yamamoto
Kyo Wakasa
Takehiko Shibata
Kohji Kusano
Tokyo University of Agriculture · JPKyoto Institute of Technology · JPRIKEN Advanced Science Institute · JPInstitute of Crop Science · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundSPO11 is a key protein for promoting meiotic recombination, by generating chromatin locus- and timing-specific DNA double-strand breaks (DSBs). The DSB activity of SPO11 was shown by genetic analyses, but whether SPO11 exerts DSB-forming activity by itself is still an unanswered question. DSB formation by SPO11 has not been detected by biochemical means, probably because of a lack of proper protein-folding, posttranslational modifications, and/or specific SPO11-interacting proteins required for this activity. In addition, plants have multiple SPO11-homologues.

resultsTo determine whether SPO11 can cleave DNA by itself, and to identify which plant SPO11 homologue cleaves DNA, we developed a Drosophila bioassay system that detects the DSB signals generated by a plant SPO11 homologue expressed ectopically. We cytologically and genetically demonstrated the DSB activities of Arabidopsis AtSPO11-1 and AtSPO11-2, which are required for meiosis, in the absence of other plant proteins. Using this bioassay, we further found that a novel SPO11-homologue, OsSPO11D, which has no counterpart in Arabidopsis, displays prominent DSB-forming activity. Quantitative analyses of the rice SPO11 transcripts revealed the specific increase in OsSPO11D mRNA in the anthers containing meiotic pollen mother cells.

conclusionsThe Drosophila bioassay system successfully demonstrated that some plant SPO11 orthologues have intrinsic DSB activities. Furthermore, we identified a novel SPO11 homologue, OsSPO11D, with robust DSB activity and a possible meiotic function.

Indexed as

Biological AssayDNA Breaks, Double-StrandedAmino Acid SequenceAnimalsArabidopsisArabidopsis ProteinsDNA TopoisomerasesDrosophilaEndodeoxyribonucleasesMeiosisMeiotic Recombination Protein SPO11Molecular Sequence DataOocytesOryzaPlant ProteinsRNA, MessengerArabidopsis ProteinsDNA TopoisomerasesEndodeoxyribonucleasesMeiotic Recombination Protein SPO11Plant ProteinsRNA, MessengerSpo11-1 protein, ArabidopsisSPO11-2 protein, Arabidopsis

Identifiers

PMID22248237
PMCPMC3273433
OpenAlexW2068571698

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.