Evidence map›Paper›PMID 22246600›Full record

ArticleFunctional & integrative genomics2012

Cultivar-specific kinetics of gene induction during downy mildew early infection in grapevine.

Andreia Figueiredo, Filipa Monteiro, Ana Margarida Fortes, Martina Bonow-Rex, Eva Zyprian, Lisete Sousa, Maria Salomé Pais

Abstract readComparative Study
PubMed Publisher
In one paragraph

Article in Functional & integrative genomics, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
7.2field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 55 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Frontiers in microbiology · 2022
    Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Strengthening Grapevine Resistance byFrontiers in plant science · 2019
    Article
  13. Article
  14. Review
  15. Article
  16. RevisitingFrontiers in plant science · 2016
    Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Andreia FigueiredoPlant Systems Biology Lab, Center of Biodiversity, Functional & Integrative Genomics, Science Faculty of Lisbon University, 1749-016 Lisbon, Portugal. aafigueiredo@fc.ul.pt
Filipa Monteiro
Ana Margarida Fortes
Martina Bonow-Rex
Eva Zyprian
Lisete Sousa
Maria Salomé Pais
University of Lisbon · PTJulius Kühn-Institut · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The oomycete pathogen Plasmopara viticola (Berk. et Curt.) Berl. et de Toni is the causing agent of the destructive downy mildew disease in grapevine. Despite the advances towards elucidation of grapevine resistance mechanisms to downy mildew, increased knowledge of the biological and genetic components of the pathosystem is important to design suitable breeding strategies. Previously, a cDNA microarray approach was used to compare two Vitis vinifera genotypes Regent and Trincadeira (resistant and susceptible to downy mildew, respectively) in field conditions. The same cDNA microarray chip was used to confirm field-based results and to compare both genotypes under greenhouse conditions at 0, 6, and 12 h post-inoculation with P. viticola. Results show that when comparing both cultivars after pathogen inoculation, there is a preferential modulation of several defense, signaling, and metabolism associated transcripts in Regent. Early transcriptional changes are discussed in terms of genetic background and resistance mechanism. This study is the first to directly compare resistant and susceptible cultivars responses as early as 6 hpi with P. viticola, providing several candidate genes potentially related to the expression of resistance traits.

Indexed as

Genes, PlantTranscriptional ActivationDisease ResistanceGene ExpressionGene Expression ProfilingGene Expression Regulation, PlantHost-Pathogen InteractionsKineticsOligonucleotide Array Sequence AnalysisOomycetesPlant DiseasesSequence Analysis, DNAVitis

Identifiers

PMID22246600
OpenAlexW2088945875

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.