Evidence map›Paper›PMID 22246508›Full record

ArticleNature genetics2012

Whole-genome sequence of Schistosoma haematobium.

Neil D Young, Aaron R Jex, Bo Li, Shiping Liu, Linfeng Yang, Zijun Xiong, Yingrui Li, Cinzia Cantacessi, Ross S Hall, Xun Xu and 18 more

Open access · hybridAbstract read
PubMed Publisher
In one paragraph

Article in Nature genetics, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 228 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
228citing papers in PubMed, 1 pooled it
35.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

228 citing papers in PubMed, 1 synthesis or guideline pooled it, 435 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Transmission-Blocking Vaccines against Schistosomiasis Japonica.International journal of molecular sciences · 2024
    Review
  10. ExperimentalPulmonary circulation · 2024
    Article
  11. Review
  12. Trematode Genomics and Proteomics.Advances in experimental medicine and biology · 2024
    Article
  13. Schistosomiasis.Advances in experimental medicine and biology · 2024
    Review
  14. Article
  15. Article
  16. Article
  17. Review
  18. Article
  19. Article
  20. Article

168 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

28 authors at 8 institutions in 7 countries.

Neil D YoungFaculty of Veterinary Science, The University of Melbourne, Victoria, Australia.
Aaron R Jex
Bo Li
Shiping Liu
Linfeng Yang
Zijun Xiong
Yingrui Li
Cinzia Cantacessi
Ross S Hall
Xun Xu
Fangyuan Chen
Xuan Wu
Adhemar Zerlotini
Guilherme Oliveira
Andreas Hofmann
Guojie Zhang
Xiaodong Fang
Yi Kang
Bronwyn E Campbell
Alex Loukas
Shoba Ranganathan
David Rollinson
Gabriel Rinaldi
Paul J Brindley
Huanming Yang
Jun Wang
Jian Wang
Robin B Gasser
BGI Group (China) · CNUniversity of Melbourne · AUGeorge Washington University · USInstituto Nacional de Ciência e Tecnologia de Doenças Tropicais · BRAustralian Institute of Tropical Health and Medicine · AUGriffith University · AUNational University of Singapore · SGNatural History Museum · GB

Funding

INFORMATICS TRAINING FOR BRAZILIAN VECTOR AND PARASITIC DISEASED43TW007012 · FIC · UNIVERSITY OF GEORGIA (UGA) · PI KISSINGER, JESSICA C · 2004 to 2013
$1.9M
FIC NIH HHS TW007012PHS HHS HHSN272201000005I
6 · The paper itself

Abstract

Schistosomiasis is a neglected tropical disease caused by blood flukes (genus Schistosoma; schistosomes) and affecting 200 million people worldwide. No vaccines are available, and treatment relies on one drug, praziquantel. Schistosoma haematobium has come into the spotlight as a major cause of urogenital disease, as an agent linked to bladder cancer and as a predisposing factor for HIV/AIDS. The parasite is transmitted to humans from freshwater snails. Worms dwell in blood vessels and release eggs that become embedded in the bladder wall to elicit chronic immune-mediated disease and induce squamous cell carcinoma. Here we sequenced the 385-Mb genome of S. haematobium using Illumina-based technology at 74-fold coverage and compared it to sequences from related parasites. We included genome annotation based on function, gene ontology, networking and pathway mapping. This genome now provides an unprecedented resource for many fundamental research areas and shows great promise for the design of new disease interventions.

Indexed as

Genome, HelminthAnimalsBase SequenceChromosome MappingFemaleMaleMolecular Sequence AnnotationSchistosoma haematobiumSequence Analysis, DNA

Identifiers

PMID22246508
OpenAlexW2107506178

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.