Evidence map›Paper›PMID 22245969›Full record

ArticleNature structural & molecular biology2012

Phosphorylation-dependent activity of the deubiquitinase DUBA.

Oscar W Huang, Xiaolei Ma, JianPing Yin, Jeremy Flinders, Till Maurer, Nobuhiko Kayagaki, Qui Phung, Ivan Bosanac, David Arnott, Vishva M Dixit and 3 more

Abstract read
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In one paragraph

Article in Nature structural & molecular biology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 80 papers.

0numbers the graph read from it
0cells of the map it votes in
80citing papers in PubMed
4.0field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

80 citing papers in PubMed, 123 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. OTU deubiquitinases in disease: roles and targeting.Trends in molecular medicine · 2026
    Review
  6. Review
  7. Article
  8. Research progress of DUB enzyme in breast cancer.Clinical and experimental medicine · 2025
    Review
  9. Regulation of Neuroinflammation by Microglial DUBA-IRAK1-IKKβ Signaling Loop.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025
    Article
  10. AKT and DUBs: a bidirectional relationship.Cellular & molecular biology letters · 2025
    Review
  11. Article
  12. Article
  13. Article
  14. Review
  15. Review
  16. Article
  17. Article
  18. Review
  19. Article
  20. Article

20 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors.

Oscar W HuangDepartment of Early Discovery Biochemistry, Genentech, South San Francisco, California, USA.
Xiaolei Ma
JianPing Yin
Jeremy Flinders
Till Maurer
Nobuhiko Kayagaki
Qui Phung
Ivan Bosanac
David Arnott
Vishva M Dixit
Sarah G Hymowitz
Melissa A Starovasnik
Andrea G Cochran

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Addition and removal of ubiquitin or ubiquitin chains to and from proteins is a tightly regulated process that contributes to cellular signaling and protein stability. Here we show that phosphorylation of the human deubiquitinase DUBA (OTUD5) at a single residue, Ser177, is both necessary and sufficient to activate the enzyme. The crystal structure of the ubiquitin aldehyde adduct of active DUBA reveals a marked cooperation between phosphorylation and substrate binding. An intricate web of interactions involving the phosphate and the C-terminal tail of ubiquitin cause DUBA to fold around its substrate, revealing why phosphorylation is essential for deubiquitinase activity. Phosphoactivation of DUBA represents an unprecedented mode of protease regulation and a clear link between two major cellular signal transduction systems: phosphorylation and ubiquitin modification.

Indexed as

Protein Processing, Post-TranslationalCrystallography, X-RayEndopeptidasesHumansModels, MolecularPhosphorylationProtein ConformationSerineUbiquitinEndopeptidasesOTUD5 protein, humanSerineUbiquitin

Identifiers

PMID22245969
OpenAlexW2039090083

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.