Evidence map›Paper›PMID 22245216›Full record

ArticleThe American journal of pathology2012

Integrative molecular profiling reveals asparagine synthetase is a target in castration-resistant prostate cancer.

Kanishka Sircar, Heng Huang, Limei Hu, David Cogdell, Jasreman Dhillon, Vassiliki Tzelepi, Eleni Efstathiou, Ismaël H Koumakpayi, Fred Saad, Dijun Luo and 5 more

Open access · bronzeAbstract read
In one paragraph

Article in The American journal of pathology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 52 papers.

0numbers the graph read from it
0cells of the map it votes in
52citing papers in PubMed
3.4field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

52 citing papers in PubMed, 81 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 4 institutions in 2 countries.

Kanishka SircarDepartment of Pathology, The University of Texas M.D. Anderson Cancer Center, Houston, Texas. Electronic address: ksircar@mdanderson.org.
Heng HuangDepartment of Computer Science and Engineering, The University of Texas Arlington, Arlington, Texas.
Limei HuDepartment of Pathology, The University of Texas M.D. Anderson Cancer Center, Houston, Texas.
David CogdellDepartment of Pathology, The University of Texas M.D. Anderson Cancer Center, Houston, Texas.
Jasreman DhillonDepartment of Pathology, The University of Texas M.D. Anderson Cancer Center, Houston, Texas.
Vassiliki TzelepiDepartment of Genitourinary Medical Oncology and the David H. Koch Center for Applied Research of Genitourinary Cancers, The University of Texas M.D. Anderson Cancer Center, Houston, Texas.
Eleni EfstathiouDepartment of Genitourinary Medical Oncology and the David H. Koch Center for Applied Research of Genitourinary Cancers, The University of Texas M.D. Anderson Cancer Center, Houston, Texas.
Ismaël H KoumakpayiResearch Center, University of Montreal, Montreal, Quebec, Canada.
Fred SaadResearch Center, University of Montreal, Montreal, Quebec, Canada.
Dijun LuoDepartment of Computer Science and Engineering, The University of Texas Arlington, Arlington, Texas.
Tarek A BismarDepartment of Pathology, University of Calgary, Calgary, Alberta, Canada.
Ana AparicioDepartment of Genitourinary Medical Oncology and the David H. Koch Center for Applied Research of Genitourinary Cancers, The University of Texas M.D. Anderson Cancer Center, Houston, Texas.
Patricia TroncosoDepartment of Pathology, The University of Texas M.D. Anderson Cancer Center, Houston, Texas.
Nora NavoneDepartment of Genitourinary Medical Oncology and the David H. Koch Center for Applied Research of Genitourinary Cancers, The University of Texas M.D. Anderson Cancer Center, Houston, Texas.
Wei ZhangDepartment of Pathology, The University of Texas M.D. Anderson Cancer Center, Houston, Texas. Electronic address: wzhang@mdanderson.org.
The University of Texas MD Anderson Cancer Center · USThe University of Texas at Arlington · USUniversité de Montréal · CAUniversity of Calgary · CA

Funding

Tumor Evolution and Metastasis ProgramP30CA016672 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI Scott Kopetz · 1985 to 2026
$290.8M
NCI NIH HHS CA 16672NCI NIH HHS P30 CA016672
6 · The paper itself

Abstract

The identification of new and effective therapeutic targets for the lethal, castration-resistant stage of prostate cancer (CRPC) has been challenging because of both the paucity of adequate frozen tissues and a lack of integrated molecular analysis. Therefore, in this study, we performed a genome-wide analysis of DNA copy number alterations from 34 unique surgical CRPC specimens and 5 xenografts, with matched transcriptomic profiling of 25 specimens. An integrated analysis of these data revealed that the asparagine synthetase (ASNS) gene showed a gain in copy number and was overexpressed at the transcript level. The overexpression of ASNS was validated by analyzing other public CRPC data sets. ASNS protein expression, as detected by reverse-phase protein lysate array, was tightly correlated with gene copy number. In addition, ASNS protein expression, as determined by IHC analysis, was associated with progression to a therapy-resistant disease state in TMAs that included 77 castration-resistant and 40 untreated prostate cancer patient samples. Knockdown of ASNS by small-interfering RNAs in asparagine-deprived media led to growth inhibition in both androgen-responsive (ie, LNCaP) and castration-resistant (ie, C4-2B) prostate cancer cell lines and in cells isolated from a CRPC xenograft (ie, MDA PCa 180-30). Together, our results suggest that ASNS is up-regulated in cases of CRPC and that depletion of asparagine using ASNS inhibitors will be a novel strategy for targeting CRPC cells.

Indexed as

AnimalsAspartate-Ammonia LigaseDNADNA Copy Number VariationsGene Expression ProfilingGene Knockdown TechniquesGenome-Wide Association StudyMaleMiceMice, Inbred C57BLMice, SCIDNeoplasms, Hormone-DependentOrchiectomyProstatic NeoplasmsRNA, MessengerRNA, Small InterferingAspartate-Ammonia LigaseDNARNA, MessengerRNA, Small Interfering

Identifiers

PMID22245216
PMCPMC4715215
OpenAlexW2134193340

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.