Evidence map›Paper›PMID 22244332›Full record

ArticleMolecular cell2012

Transcriptional regulation by Pol II(G) involving mediator and competitive interactions of Gdown1 and TFIIF with Pol II.

Miki Jishage, Sohail Malik, Ulrich Wagner, Beatrix Uberheide, Yasushi Ishihama, Xiaopeng Hu, Brian T Chait, Averell Gnatt, Bing Ren, Robert G Roeder

Erratum issuedAbstract read
In one paragraph

Article in Molecular cell, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 49 papers.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed
4.6field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed, 73 citations in OpenAlex.

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  9. Review
  10. Reconstitution of Pol II (G) responsive form of the human Mediator complex.Turkish journal of biology = Turk biyoloji dergisi · 2021
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 3 countries.

Miki JishageLaboratory of Biochemistry and Molecular Biology, The Rockefeller University, New York, NY 10065, USA.
Sohail Malik
Ulrich Wagner
Beatrix Uberheide
Yasushi Ishihama
Xiaopeng Hu
Brian T Chait
Averell Gnatt
Bing Ren
Robert G Roeder
Rockefeller University · USUniversity of California San Diego · USUniversity of Maryland, Baltimore · USKeio University · JP

Funding

YNG1 PHD BINDING TO H3 3METHYL AT K4 PROMOTES TRANSCRIPTION AT TARGETED ORFSP41RR000862 · NCRR · ROCKEFELLER UNIVERSITY · PI DARNELL, JAMES E · 1985 to 2011
$16.1M
Nuclear Receptor Coactivator Functions and MechanismsR01DK071900 · NIDDK · ROCKEFELLER UNIVERSITY · PI ROEDER, ROBERT G · 2005 to 2015
$5.9M
Mechanisms of p53 target gene activation in DNA damage responsesR01CA129325 · NCI · ROCKEFELLER UNIVERSITY · PI ROEDER, ROBERT G · 2007 to 2011
$4.0M
Regulation of Transcription:Structure Function BasisR01GM064474 · NIGMS · UNIVERSITY OF MARYLAND BALTIMORE · PI GNATT, AVERELL L · 2002 to 2006
$1.4M
Structure-Function Studies of the Modular Human Mediator Coactivator ComplexRC1GM090929 · NIGMS · ROCKEFELLER UNIVERSITY · PI ROEDER, ROBERT G · 2009 to 2010
$943k
NCI NIH HHS CA129325NCI NIH HHS R01 CA129325NCRR NIH HHS P41 RR000862NCRR NIH HHS RR00862NIDDK NIH HHS DK071900NIDDK NIH HHS R01 DK071900NIGMS NIH HHS GM64474NIGMS NIH HHS R01 GM064474NIGMS NIH HHS RC1 GM090929
6 · The paper itself

Abstract

Pol II(G) is a distinct form of RNA polymerase II that contains the tightly associated Gdown1 polypeptide (encoded by POLR2M). Unlike Pol II, Pol II(G) is highly dependent upon Mediator for robust activator-dependent transcription in a biochemically defined in vitro system. Here, in vitro studies show that Gdown1 competes with TFIIF for binding to the RPB1 and RPB5 subunits of Pol II, thereby inhibiting an essential function of TFIIF in preinitiation complex assembly, but also that Mediator can actually facilitate Pol II(G) binding to the promoter prior to subsequent Mediator functions. Complementary ChIP and RNAi analyses reveal that Pol II(G) is recruited to promoter regions of subsets of actively transcribed genes, where it appears to restrict transcription. These and other results suggest that Pol II(G) may act to modulate some genes while simultaneously, as a poised (noninitiated) polymerase, setting the stage for Mediator-dependent enhancement of their activity.

Indexed as

Gene Expression RegulationTranscription, GeneticBinding, CompetitiveDNA-Directed RNA PolymerasesHeLa CellsHumansMediator ComplexRNA Polymerase IITranscription Factors, TFIIDNA-Directed RNA PolymerasesMediator ComplexPOLR2E protein, humanPOLR2M protein, humanRNA Polymerase IITranscription Factors, TFIItranscription factor TFIIF

Identifiers

PMID22244332
PMCPMC3259531
OpenAlexW2138416415

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.