Evidence map›Paper›PMID 22244331›Full record

ArticleMolecular cell2012

Functional association of Gdown1 with RNA polymerase II poised on human genes.

Bo Cheng, Tiandao Li, Peter B Rahl, Todd E Adamson, Nicholas B Loudas, Jiannan Guo, Katayoun Varzavand, Jeffrey J Cooper, Xiaopeng Hu, Averell Gnatt and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in Molecular cell, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 95 papers.

0numbers the graph read from it
0cells of the map it votes in
95citing papers in PubMed
7.5field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

95 citing papers in PubMed, 125 citations in OpenAlex.

  1. Article
  2. Article
  3. Structure of cytoplasmic RNA polymerase II.Nature communications · 2026
    Article
  4. Review
  5. Article
  6. Article
  7. CRL3Molecular cell · 2024
    Article
  8. Article
  9. Activation of theGenes · 2024
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Review
  18. CDK9 keeps RNA polymerase II on track.Cellular and molecular life sciences : CMLS · 2021
    Review
  19. Reconstitution of Pol II (G) responsive form of the human Mediator complex.Turkish journal of biology = Turk biyoloji dergisi · 2021
    Article
  20. Review

35 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 2 countries.

Bo ChengMolecular and Cellular Biology Program, University of Iowa, Iowa City, IA 52242, USA.
Tiandao Li
Peter B Rahl
Todd E Adamson
Nicholas B Loudas
Jiannan Guo
Katayoun Varzavand
Jeffrey J Cooper
Xiaopeng Hu
Averell Gnatt
Richard A Young
David H Price
University of Iowa · USWhitehead Institute for Biomedical Research · USSun Yat-sen University · CNUniversity of Maryland, Baltimore · US

Funding

Transcriptional Regulatory Networks in Living CellsR01HG002668 · NHGRI · WHITEHEAD INSTITUTE FOR BIOMEDICAL RES · PI YOUNG, RICHARD · 2003 to 2016
$17.9M
FACTORS INVOLVED IN TRANSCRIPTION BY RNA POLYMERSASE IIR01GM035500 · NIGMS · UNIVERSITY OF IOWA · PI PRICE, DAVID H · 1985 to 2017
$6.5M
Regulation of Transcription:Structure Function BasisR01GM064474 · NIGMS · UNIVERSITY OF MARYLAND BALTIMORE · PI GNATT, AVERELL L · 2002 to 2006
$1.4M
Analysis of interactions of HIV Tat and TAR with HEXIM1, 7SK, and P-TEFbR33AI074392 · NIAID · UNIVERSITY OF IOWA · PI PRICE, DAVID H · 2009 to 2011
$1.1M
Analysis of interactions of HIV Tat and TAR with HEXIM1, 7SK, and P-TEFbR21AI074392 · NIAID · UNIVERSITY OF IOWA · PI PRICE, DAVID H · 2007 to 2008
$419k
NHGRI NIH HHS HG002668-05NHGRI NIH HHS R01 HG002668NIAID NIH HHS AI074392NIAID NIH HHS R21 AI074392NIAID NIH HHS R33 AI074392NIGMS NIH HHS GM35500NIGMS NIH HHS GM64474NIGMS NIH HHS R01 GM035500NIGMS NIH HHS R01 GM064474
6 · The paper itself

Abstract

Most human genes are loaded with promoter-proximally paused RNA polymerase II (Pol II) molecules that are poised for release into productive elongation by P-TEFb. We present evidence that Gdown1, the product of the POLR2M gene that renders Pol II responsive to Mediator, is involved in Pol II elongation control. During in vitro transcription, Gdown1 specifically blocked elongation stimulation by TFIIF, inhibited the termination activity of TTF2, and influenced pausing factors NELF and DSIF, but did not affect the function of TFIIS or the mRNA capping enzyme. Without P-TEFb, Gdown1 led to the production of stably paused polymerases in the presence of nuclear extract. Supporting these mechanistic insights, ChIP-Seq demonstrated that Gdown1 mapped over essentially all poised polymerases across the human genome. Our results establish that Gdown1 stabilizes poised polymerases while maintaining their responsiveness to P-TEFb and suggest that Mediator overcomes a Gdown1-mediated block of initiation by allowing TFIIF function.

Indexed as

HeLa CellsHumansRNA Polymerase IITranscription Factors, TFIITranscription, GeneticPOLR2M protein, humanRNA Polymerase IITranscription Factors, TFIItranscription factor TFIIF

Identifiers

PMID22244331
PMCPMC3259526
OpenAlexW2063113718

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.