Evidence map›Paper›PMID 22241686›Full record

ArticleBirth defects research. Part A, Clinical and molecular teratology2012

Evidence of gene-environment interaction for the RUNX2 gene and environmental tobacco smoke in controlling the risk of cleft lip with/without cleft palate.

Tao Wu, M Daniele Fallin, Min Shi, Ingo Ruczinski, Kung Yee Liang, Jacqueline B Hetmanski, Hong Wang, Roxann G Ingersoll, Shangzhi Huang, Xiaoqian Ye and 10 more

Abstract read
In one paragraph

Article in Birth defects research. Part A, Clinical and molecular teratology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Review
  7. Article
  8. Genome-wide Interaction Study ImplicatesFrontiers in cell and developmental biology · 2022
    Article
  9. Article
  10. Article
  11. Article
  12. NovelJournal of genetics · 2018
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors.

Tao WuPeking University School of Public Health, Beijing, China.
M Daniele Fallin
Min Shi
Ingo Ruczinski
Kung Yee Liang
Jacqueline B Hetmanski
Hong Wang
Roxann G Ingersoll
Shangzhi Huang
Xiaoqian Ye
Yah-Huei Wu-Chou
Philip K Chen
Ethylin Wang Jabs
Bing Shi
Richard Redett
Alan F Scott
Jeffrey C Murray
Mary L Marazita
Ronald G Munger
Terri H Beaty

Funding

Extending the Phenotype of Nonsyndromic Orofacial CleftsR01DE016148 · NIDCR · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI MARAZITA, MARY L., WEINBERG, SETH M · 2004 to 2018
$19.7M
Molecular Genetic Epidemiology of Cleft Lip and PalateR37DE008559 · NIDCR · UNIVERSITY OF IOWA · PI MURRAY, JEFFREY C · 2004 to 2013
$6.8M
International Genetic Epidemiology of Oral CleftsR01DE014581 · NIDCR · JOHNS HOPKINS UNIVERSITY · PI BEATY, TERRI H · 2004 to 2013
$6.6M
Collaborative Genetics Research Training ProgramD43TW006176 · FIC · JOHNS HOPKINS UNIVERSITY · PI JABS, ETHYLIN WANG · 2002 to 2006
$2.0M
International Consortium to Identify Genes and Interactions Controlling Oral ClefU01DE018993 · NIDCR · JOHNS HOPKINS UNIVERSITY · PI BEATY, TERRI H · 2007 to 2008
$1.6M
Oral Clefts: Moving from Genome Wide Studies Toward Functional GenomicsU01DE020073 · NIDCR · JOHNS HOPKINS UNIVERSITY · PI BEATY, TERRI H · 2009 to 2013
$1.1M
INTERNATIONAL GENETIC EPIDEMIOLOGY OF ORAL CLEFTSR21DE013707 · NIDCR · JOHNS HOPKINS UNIVERSITY · PI BEATY, TERRI H · 2000 to 2001
$246k
FIC NIH HHS D43 TW006176FIC NIH HHS D43 TW06176Intramural NIH HHSNIDCR NIH HHS R01 DE014581NIDCR NIH HHS R01-DE-014581NIDCR NIH HHS R01 DE016148NIDCR NIH HHS R21 DE013707NIDCR NIH HHS R21-DE-013707NIDCR NIH HHS R37 DE008559NIDCR NIH HHS U01-DE-004425NIDCR NIH HHS U01 DE018993NIDCR NIH HHS U01 DE020073
6 · The paper itself

Abstract

This study examined the association between 49 markers in the Runt-related transcription factor 2 (RUNX2) gene and nonsyndromic cleft lip with/without cleft palate (CL/P) among 326 Chinese case-parent trios, while considering gene-environment (GxE) interaction and parent-of-origin effects. Five single-nucleotide polymorphisms (SNPs) showed significant evidence of linkage and association with CL/P and these results were replicated in an independent European sample of 825 case-parent trios. We also report compelling evidence for interaction between markers in RUNX2 and environmental tobacco smoke (ETS). Although most marginal SNP effects (i.e., ignoring maternal exposures) were not statistically significant, eight SNPs were significant when considering possible interaction with ETS when testing for gene (G) and GxE interaction simultaneously or when considering GxE alone. Independent samples from European populations showed consistent evidence of significant GxETS interaction at two SNPs (rs6904353 and rs7748231). Our results suggest genetic variation in RUNX2 may influence susceptibility to CL/P through interacting with ETS.

Indexed as

Gene-Environment InteractionPolymorphism, Single NucleotideAsian PeopleChinaCleft LipCleft PalateCore Binding Factor Alpha 1 SubunitEuropeFemaleGenetic LinkageGenetic Predisposition to DiseaseGenotypeHumansMaleMaternal ExposurePregnancyCore Binding Factor Alpha 1 SubunitRUNX2 protein, humanTobacco Smoke Pollution

Identifiers

PMID22241686
PMCPMC3608124

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.