Evidence map›Paper›PMID 22239981›Full record

ArticlePlasmid2012

Two replication regions in the pJM1 virulence plasmid of the marine pathogen Vibrio anguillarum.

Hiroaki Naka, Qian Chen, Yasutami Mitoma, Yusuke Nakamura, Daniel McIntosh-Tolle, Alison E Gammie, Marcelo E Tolmasky, Jorge H Crosa

Open access · greenAbstract read
In one paragraph

Article in Plasmid, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.2field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 8 citations in OpenAlex.

  1. Plasmid- and chromosome-encoded siderophore anguibactin systems found in marine vibrios: biosynthesis, transport and evolution.Biometals : an international journal on the role of metal ions in biology, biochemistry, and medicine · 2013
    Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Hiroaki NakaDepartment of Molecular Microbiology and Immunology, Oregon Health and Science University, Portland, OR 97239, USA. nakah@ohsu.edu
Qian Chen
Yasutami Mitoma
Yusuke Nakamura
Daniel McIntosh-Tolle
Alison E Gammie
Marcelo E Tolmasky
Jorge H Crosa
Oregon Health & Science University · US

Funding

IRON UPTAKE AS A VIRULENCE FACTOR IN PATHOGENIC VIBRIOSR01AI019018 · NIAID · OREGON HEALTH & SCIENCE UNIVERSITY · PI CROSA, JORGE H · 1985 to 2011
$3.9M
NIAID NIH HHS AI19018NIAID NIH HHS R01 AI019018
6 · The paper itself

Abstract

Vibrio anguillarum is a fish pathogen that causes vibriosis, a serious hemorrhagic septicemia, in wild and cultured fish. Many serotype O1 strains of this bacterium harbor the 65kb plasmid pJM1 carrying the majority of genes encoding the siderophore anguibactin iron transport system that is one of the most important virulence factors of this bacterium. We previously identified a replication region of the pJM1 plasmid named ori1. In this work we determined that ori1 can replicate in Escherichia coli and that the chromosome-encoded proteins DnaB, DnaC and DnaG are essential for its replication whereas PolI, IHF and DnaA are not required. The copy number of the pJM1 plasmid is 1-2, albeit cloned smaller fragments of the ori1 region replicate with higher copy numbers in V. anguillarum while in E. coli we did not observe an obvious difference of the copy numbers of these constructs which were all high. Furthermore, we were able to delete the ori1 region from the pJM1 plasmid and identified a second replication region in pJM1 that we named ori2. This second replication region is located on ORF25 that is within the trans-acting factor (TAFr) region, and showed that it can only replicate in V. anguillarum.

Indexed as

DNA ReplicationReplication OriginChromosomes, BacterialDNA Copy Number VariationsEscherichia coliGene OrderOpen Reading FramesPlasmidsVibrioVirulence

Identifiers

PMID22239981
PMCPMC3319172
OpenAlexW1994913754

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.