ArticlePloS one2012
SNP discovery and development of a high-density genotyping array for sunflower.
Article in PloS one, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 58 papers.
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Who cites it
58 citing papers in PubMed.
- Genome-wide assessment of genetic diversity and selective signatures in sunflower (Helianthus annuus L.) using a 10 K SNP array.Scientific reports · 2026Article
- Development and validation of a high-density 'Amahysnp' genotyping array in grain amaranth (Amaranthus hypochondriacus).BMC plant biology · 2025Article
- Transcriptome analysis identifies genes regulating self-compatibility, flowering time, and oil biosynthesis in Noug (Guizotia abyssinica).Scientific reports · 2025Article
- Optimization of commercial SNP arrays and the generation of a high-efficiency GenoBaits Peanut 10K panel.Scientific reports · 2025Article
- Development and characterization of a new sunflower source of resistance to race G of Orobanche cumana Wallr. derived from Helianthus anomalus.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024Article
- On the usefulness of mock genomes to define heterotic pools, testers, and hybrid predictions in orphan crops.Frontiers in plant science · 2023Article
- Transcriptomics of developing wild sunflower seeds from the extreme ends of a latitudinal gradient differing in seed oil composition.Plant direct · 2022Article
- Applications of Genomic Tools in Plant Breeding: Crop Biofortification.International journal of molecular sciences · 2022Review
- Genetic and physiological characterization of sunflower resistance provided by the wild-derived OrTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022Article
- Current Research Trends and Prospects for Yield and Quality Improvement in Sesame, an Important Oilseed Crop.Frontiers in plant science · 2022Review
- Construction of transgenic detection system of3 Biotech · 2022Article
- A TILLING by sequencing approach to identify induced mutations in sunflower genes.Scientific reports · 2021Article
- Development and validation of an SNP genotyping array and construction of a high-density linkage map in castor.Scientific reports · 2019Article
- Korean soybean core collection: Genotypic and phenotypic diversity population structure and genome-wide association study.PloS one · 2019Article
- Development and Application of High-Density AxiomThe plant genome · 2018Article
- Using semantics for representing experimental protocols.Journal of biomedical semantics · 2017Article
- An innovative SNP genotyping method adapting to multiple platforms and throughputs.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2017Article
- Development and Evaluation of a High Density Genotyping 'Axiom_Arachis' Array with 58 K SNPs for Accelerating Genetics and Breeding in Groundnut.Scientific reports · 2017Article
- Article
- Sunflower Hybrid Breeding: From Markers to Genomic Selection.Frontiers in plant science · 2017Review
Corrections and comments
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Authors and funding
7 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Recent advances in next-generation DNA sequencing technologies have made possible the development of high-throughput SNP genotyping platforms that allow for the simultaneous interrogation of thousands of single-nucleotide polymorphisms (SNPs). Such resources have the potential to facilitate the rapid development of high-density genetic maps, and to enable genome-wide association studies as well as molecular breeding approaches in a variety of taxa. Herein, we describe the development of a SNP genotyping resource for use in sunflower (Helianthus annuus L.). This work involved the development of a reference transcriptome assembly for sunflower, the discovery of thousands of high quality SNPs based on the generation and analysis of ca. 6 Gb of transcriptome re-sequencing data derived from multiple genotypes, the selection of 10,640 SNPs for inclusion in the genotyping array, and the use of the resulting array to screen a diverse panel of sunflower accessions as well as related wild species. The results of this work revealed a high frequency of polymorphic SNPs and relatively high level of cross-species transferability. Indeed, greater than 95% of successful SNP assays revealed polymorphism, and more than 90% of these assays could be successfully transferred to related wild species. Analysis of the polymorphism data revealed patterns of genetic differentiation that were largely congruent with the evolutionary history of sunflower, though the large number of markers allowed for finer resolution than has previously been possible.
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