Evidence map›Paper›PMID 22238642›Full record

ArticlePloS one2012

CTL responses of high functional avidity and broad variant cross-reactivity are associated with HIV control.

Beatriz Mothe, Anuska Llano, Javier Ibarrondo, Jennifer Zamarreño, Mattia Schiaulini, Cristina Miranda, Marta Ruiz-Riol, Christoph T Berger, M José Herrero, Eduard Palou and 13 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 101 papers.

0numbers the graph read from it
0cells of the map it votes in
101citing papers in PubMed
9.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

101 citing papers in PubMed, 135 citations in OpenAlex.

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  3. HLA-B*14:02-Restricted Env-Specific CD8Journal of virology · 2017
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  15. CD3 downregulation identifies high-avidity human CD8 T cells.Clinical and experimental immunology · 2024
    Article
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  17. Article
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41 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 12 institutions in 2 countries.

Beatriz MotheIrsiCaixa AIDS Research Institute-HIVACAT, Hospital Germans Trias i Pujol, Badalona, Barcelona, Spain.
Anuska Llano
Javier Ibarrondo
Jennifer Zamarreño
Mattia Schiaulini
Cristina Miranda
Marta Ruiz-Riol
Christoph T Berger
M José Herrero
Eduard Palou
Montse Plana
Morgane Rolland
Ashok Khatri
David Heckerman
Florencia Pereyra
Bruce D Walker
David Weiner
Roger Paredes
Bonaventura Clotet
Barbara K Felber
George N Pavlakis
James I Mullins
Christian Brander
IrsiCaixa · ESFundació Lluita contra les Infeccions · ESBanc de Sang i Teixits · ESFrederick National Laboratory for Cancer Research · USRagon Institute of MGH, MIT and Harvard · USUniversitat Autònoma de Barcelona · ESUniversity of Washington · USConsorci Institut D'Investigacions Biomediques August Pi I Sunyer · ESHoward Hughes Medical Institute · USMassachusetts General Hospital · USMicrosoft (United States) · USUniversity of Pennsylvania · US

Funding

The impact of HIV viral diversity and cellular immunity on HIV pathogenesisP30AI060354 · NIAID · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI ROBERT A. PARKER · 2004 to 2026
$94.4M
Prevention of AIDSZIABC010350 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI FELBER, BARBARA K · 2009 to 2025
$30.0M
Immunotherapeutic Approaches for AIDSZIABC010749 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI PAVLAKIS, GEORGE N. · 2009 to 2022
$21.6M
Viral Determinants of HIV-1 Transmission in African HeterosexualsP01AI057005 · NIAID · UNIVERSITY OF WASHINGTON · PI COREY, LAWRENCE · 2003 to 2014
$20.5M
Howard Hughes Medical InstituteNIAID NIH HHS P01 AI057005NIAID NIH HHS P30 AI060354
6 · The paper itself

Abstract

Cytotoxic T lymphocyte (CTL) responses targeting specific HIV proteins, in particular Gag, have been associated with relative control of viral replication in vivo. However, Gag-specific CTL can also be detected in individuals who do not control the virus and it remains thus unclear how Gag-specific CTL may mediate the beneficial effects in some individuals but not in others. Here, we used a 10mer peptide set spanning HIV Gag-p24 to determine immunogen-specific T-cell responses and to assess functional properties including functional avidity and cross-reactivity in 25 HIV-1 controllers and 25 non-controllers without protective HLA class I alleles. Our data challenge the common belief that Gag-specific T cell responses dominate the virus-specific immunity exclusively in HIV-1 controllers as both groups mounted responses of comparable breadths and magnitudes against the p24 sequence. However, responses in controllers reacted to lower antigen concentrations and recognized more epitope variants than responses in non-controllers. These cross-sectional data, largely independent of particular HLA genetics and generated using direct ex-vivo samples thus identify T cell responses of high functional avidity and with broad variant reactivity as potential functional immune correlates of relative HIV control.

Indexed as

AdultAmino Acid SequenceCase-Control StudiesCross ReactionsCross-Sectional StudiesDisease ProgressionFemaleHIV-1HIV InfectionsHumansMaleMiddle AgedMolecular Sequence DataT-Cell Antigen Receptor SpecificityT-Lymphocytes, CytotoxicYoung Adult

Identifiers

PMID22238642
PMCPMC3251596
OpenAlexW1977328931

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.