Evidence map›Paper›PMID 22238603›Full record

ArticlePloS one2012

BAC-based sequencing of behaviorally-relevant genes in the prairie vole.

Lisa A McGraw, Jamie K Davis, Pamela J Thomas, NISC Comparative Sequencing Program, Larry J Young, James W Thomas

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 12 citations in OpenAlex.

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  6. Balancing selection maintains polymorphisms at neurogenetic loci in field experiments.Proceedings of the National Academy of Sciences of the United States of America · 2017
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Lisa A McGrawCenter for Translational Social Neuroscience and Yerkes National Primate Research Center, Emory University, Atlanta, Georgia, United States of America. lamcgraw@ncsu.edu
Jamie K Davis
Pamela J Thomas
NISC Comparative Sequencing Program
Larry J Young
James W Thomas
Emory University · USNational Institutes of Health · US

Funding

Inter- and Intra-Species Comparative SequencingZIBHG000196 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI THOMAS, JAMES · 2009 to 2025
$177.6M
Yerkes National Primate Research Center Role of type-I IFN in regulating COVID-19 induced inflammation and pathogenesisP51OD011132 · OD · EMORY UNIVERSITY · PI Joon Sup Lee · 2012 to 2026
$167.0M
YNPRC NHP CLINICAL MEDICINE RESIDENCY PROGRAM - SUPPLEMENTP51RR000165 · NCRR · EMORY UNIVERSITY · PI ALTMAN, JOHN DAVID · 1985 to 2011
$114.0M
Comparative Genomics Unit ResearchZIAHG200330 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI MULLIKIN, JAMES C · 2009 to 2022
$17.9M
Vasopressin Receptors and Social AttachmentK02MH064692 · NIMH · EMORY UNIVERSITY · PI YOUNG, LARRY J · 2002 to 2011
$1.2M
Development of genomic resources for prairie volesR21MH082225 · NIMH · EMORY UNIVERSITY · PI YOUNG, LARRY J · 2008 to 2009
$436k
The Role of Afadin in Coordinating Cell Adhesion Molecules during SynaptogenesisF32MH079661 · NIMH · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI BEAUDOIN III, GERARD MJ · 2008 to 2010
$155k
Autism Speaks AS2002Intramural NIH HHSNCRR NIH HHS P51 RR000165NCRR NIH HHS RR00165NIH HHS P51 OD011132NIMH NIH HHS 1F32MH079661NIMH NIH HHS 1R21MH082225NIMH NIH HHS F32 MH079661NIMH NIH HHS K02 MH064692NIMH NIH HHS MH064692NIMH NIH HHS R21 MH082225
6 · The paper itself

Abstract

The prairie vole (Microtus ochrogaster) is an important model organism for the study of social behavior, yet our ability to correlate genes and behavior in this species has been limited due to a lack of genetic and genomic resources. Here we report the BAC-based targeted sequencing of behaviorally-relevant genes and flanking regions in the prairie vole. A total of 6.4 Mb of non-redundant or haplotype-specific sequence assemblies were generated that span the partial or complete sequence of 21 behaviorally-relevant genes as well as an additional 55 flanking genes. Estimates of nucleotide diversity from 13 loci based on alignments of 1.7 Mb of haplotype-specific assemblies revealed an average pair-wise heterozygosity (8.4×10(-3)). Comparative analyses of the prairie vole proteins encoded by the behaviorally-relevant genes identified >100 substitutions specific to the prairie vole lineage. Finally, our sequencing data indicate that a duplication of the prairie vole AVPR1A locus likely originated from a recent segmental duplication spanning a minimum of 105 kb. In summary, the results of our study provide the genomic resources necessary for the molecular and genetic characterization of a high-priority set of candidate genes for regulating social behavior in the prairie vole.

Indexed as

Amino Acid SequenceAnimalsArvicolinaeBehavior, AnimalChromosomes, Artificial, BacterialGene FrequencyGenesGenetic VariationINDEL MutationPhylogenyPolymorphism, Single NucleotideSegmental Duplications, GenomicSequence AlignmentSequence Analysis, DNA

Identifiers

PMID22238603
PMCPMC3253076
OpenAlexW2064923576

What OpenQuestion holds

Textmetadata
LicenceCC0
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.