Evidence map›Paper›PMID 22238313›Full record

ArticleJournal of virology2012

Neutralizing epitopes in the membrane-proximal external region of HIV-1 gp41 are influenced by the transmembrane domain and the plasma membrane.

Marinieve Montero, Naveed Gulzar, Kristina-Ana Klaric, Jason E Donald, Christa Lepik, Sampson Wu, Sue Tsai, Jean-Philippe Julien, Ann J Hessell, Shixia Wang and 5 more

Open access · bronzeAbstract read
In one paragraph

Article in Journal of virology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
4.8field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 63 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 5 institutions in 2 countries.

Marinieve MonteroDept. of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, British Columbia, Canada.
Naveed Gulzar
Kristina-Ana Klaric
Jason E Donald
Christa Lepik
Sampson Wu
Sue Tsai
Jean-Philippe Julien
Ann J Hessell
Shixia Wang
Shan Lu
Dennis R Burton
Emil F Pai
William F Degrado
Jamie K Scott
Simon Fraser University · CAScripps Research Institute · USUniversity of Massachusetts Chan Medical School · USUniversity of Pennsylvania · USUniversity of Toronto · CA

Funding

HUMAN ANTIBODIES TO HIV-1 BY REPERTOIRE CLONINGR01AI033292 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI BURTON, DENNIS R. · 1992 to 2013
$5.9M
Vaccines that Replicate the Neutralization-Competent Structure of the gp41 MPERR01AI097051 · NIAID · SIMON FRASER UNIVERSITY · PI DEGRADO, WILLIAM, LU, SHAN · 2012 to 2015
$2.7M
Immunogenicity of the Membrane-Proximal Region of HIV-1 gp41R03AI068502 · NIAID · SIMON FRASER UNIVERSITY · PI SCOTT, JAMIE KATHLEEN · 2006 to 2007
$122k
CIHRNIAID NIH HHS R01 AI033292NIAID NIH HHS R01 AI097051NIAID NIH HHS R03 AI068502NIAID NIH HHS R03-AI 068502
6 · The paper itself

Abstract

Failure to elicit broadly neutralizing (bNt) antibodies (Abs) against the membrane-proximal external region of HIV-1 gp41 (MPER) reflects the difficulty of mimicking its neutralization-competent structure (NCS). Here, we analyzed MPER antigenicity in the context of the plasma membrane and identified a role for the gp41 transmembrane domain (TM) in exposing the epitopes of three bNt monoclonal Abs (MAbs) (2F5, 4E10, and Z13e1). We transiently expressed DNA constructs encoding gp41 ectodomain fragments fused to either the TM of the platelet-derived growth factor receptor (PDGFR) or the gp41 TM and cytoplasmic tail domain (CT). Constructs encoding the MPER tethered to the gp41 TM followed by a 27-residue CT fragment (MPER-TM1) produced optimal MAb binding. Critical binding residues for the three Nt MAbs were identified using a panel of 24 MPER-TM1 mutants bearing single amino acid substitutions in the MPER; many were previously shown to affect MAb-mediated viral neutralization. Moreover, non-Nt mutants of MAbs 2F5 and 4E10 exhibited a reduction in binding to MPER-TM1 and yet maintained binding to synthetic MPER peptides, indicating that MPER-TM1 better approximates the MPER NCS than peptides. Replacement of the gp41 TM and CT of MPER-TM1 with the PDGFR TM reduced binding by MAb 4E10, but not 2F5, indicating that the gp41 TM plays a pivotal role in orienting the 4E10 epitope, and more globally, in affecting MPER exposure.

Indexed as

AnimalsAntibodies, MonoclonalAntibodies, NeutralizingCell LineCell MembraneEpitopesHIV-1HIV Envelope Protein gp41HIV InfectionsHumansProtein Structure, TertiaryAntibodies, MonoclonalAntibodies, NeutralizingEpitopesHIV Envelope Protein gp41

Identifiers

PMID22238313
PMCPMC3302331
OpenAlexW2113597847

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.