Evidence map›Paper›PMID 22237917›Full record

ArticleBehavior genetics2012

Genome-wide association for fear conditioning in an advanced intercross mouse line.

Clarissa C Parker, Greta Sokoloff, Riyan Cheng, Abraham A Palmer

Open access · greenAbstract read
In one paragraph

Article in Behavior genetics, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
2.7field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 47 citations in OpenAlex.

  1. Article
  2. A novel anxiety-associated SNP identified inFrontiers in behavioral neuroscience · 2024
    Article
  3. Review
  4. Article
  5. RGS14 Regulation of Post-Synaptic Signaling and Spine Plasticity in Brain.International journal of molecular sciences · 2021
    Review
  6. Article
  7. Using Heterogeneous Stocks for Fine-Mapping Genetically Complex Traits.Methods in molecular biology (Clifton, N.J.) · 2019
    Review
  8. Article
  9. Article
  10. Article
  11. Quantitative Trait Loci and a Novel Genetic Candidate for Fear Learning.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2016
    Article
  12. Review
  13. Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Out of the bottleneck: the Diversity Outcross and Collaborative Cross mouse populations in behavioral genetics research.Mammalian genome : official journal of the International Mammalian Genome Society · 2014
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Clarissa C ParkerDepartment of Human Genetics, University of Chicago, 920 E 58th St., Chicago, IL 60637, USA.
Greta Sokoloff
Riyan Cheng
Abraham A Palmer
University of Chicago · US

Funding

NEUROPSYCHOPHARMACOLOLGY TRG FOR DRUG ABUSE RESEARCHT32DA007255 · NIDA · UNIVERSITY OF CHICAGO · PI VEZINA, PAUL R · 1991 to 2012
$5.9M
Systems Genetic Analysis of Methamphetamine's Motivational Effects in a Mouse AILR01DA021336 · NIDA · UNIVERSITY OF CHICAGO · PI PALMER, ABRAHAM A · 2006 to 2015
$4.0M
Genome-wide association studies in outbred miceR01GM097737 · NIGMS · UNIVERSITY OF CHICAGO · PI PALMER, ABRAHAM A · 2011 to 2014
$1.9M
FINDING GENES THAT CAUSE QLT FOR FEAR LEARNING AND ANXIETYR01MH079103 · NIMH · UNIVERSITY OF CHICAGO · PI PALMER, ABRAHAM A · 2007 to 2011
$1.9M
Novel Methods to Map Stimulant QTLs in Advanced Intercross LinesR21DA024845 · NIDA · UNIVERSITY OF CHICAGO · PI PALMER, ABRAHAM A · 2008 to 2009
$422k
NIDA NIH HHS R01 DA021336NIDA NIH HHS R01DA021336NIDA NIH HHS R21 DA024845NIDA NIH HHS R21DA024845NIDA NIH HHS T32 DA007255NIDA NIH HHS T32DA07255NIGMS NIH HHS R01 GM097737NIMH NIH HHS R01 MH079103NIMH NIH HHS R01MH079103
6 · The paper itself

Abstract

Fear conditioning (FC) may provide a useful model for some components of post-traumatic stress disorder (PTSD). We used a C57BL/6J × DBA/2J F(2) intercross (n = 620) and a C57BL/6J × DBA/2J F(8) advanced intercross line (n = 567) to fine-map quantitative trait loci (QTL) associated with FC. We conducted an integrated genome-wide association analysis in QTLRel and identified five highly significant QTL affecting freezing to context as well as four highly significant QTL associated with freezing to cue. The average percent decrease in QTL width between the F(2) and the integrated analysis was 59.2%. Next, we exploited bioinformatic sequence and expression data to identify candidate genes based on the existence of non-synonymous coding polymorphisms and/or expression QTLs. We identified numerous candidate genes that have been previously implicated in either fear learning in animal models (Bcl2, Btg2, Dbi, Gabr1b, Lypd1, Pam and Rgs14) or PTSD in humans (Gabra2, Oprm1 and Trkb); other identified genes may represent novel findings. The integration of F(2) and AIL data maintains the advantages of studying FC in model organisms while significantly improving resolution over previous approaches.

Indexed as

Genome-Wide Association StudyAcoustic StimulationAnimalsComputational BiologyConditioning, PsychologicalCrosses, GeneticCuesData Interpretation, StatisticalElectroshockFearFemaleGenotypeMaleMiceMice, Inbred C57BLMice, Inbred DBA

Identifiers

PMID22237917
PMCPMC3351497
OpenAlexW1969152842

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.