Evidence map›Paper›PMID 22237106›Full record

ArticleNature2012

The genetic basis of early T-cell precursor acute lymphoblastic leukaemia.

Jinghui Zhang, Li Ding, Linda Holmfeldt, Gang Wu, Sue L Heatley, Debbie Payne-Turner, John Easton, Xiang Chen, Jianmin Wang, Michael Rusch and 59 more

Registry-linked trialAbstract read
In one paragraph

Article in Nature, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT00137111 (Total XV - Total Therapy Study XV for Newly Diagnosed Patients With Acute Lymphoblastic Leukemia), which is not on this map. Cited by 966 papers.

0numbers the graph read from it
0cells of the map it votes in
966citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT00137111 phase3completednot on this map

Total XV - Total Therapy Study XV for Newly Diagnosed Patients With Acute Lymphoblastic Leukemia

TypeinterventionalSponsorSt. Jude Children's Research HospitalRan2000 to 2014Enrolled501ConditionsLymphoblastic Leukemia, AcuteArmsPrednisone, Dexamethasone, Vincristine, Daunorubicin, Doxorubicin, L-asparaginase, PEG-L-asparaginase, Erwinia asparaginase, Methotrexate, Cyclophosphamide, Cytarabine, Etoposide, Mercaptopurine, Imatinib, chemotherapy, intrathecal chemotherapy
3 · Its place in the literature

Who cites it

966 citing papers in PubMed.

  1. Trial
  2. Trial
  3. Trial
  4. Article
  5. Review
  6. Article
  7. Article
  8. Review
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

906 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

69 authors.

Jinghui ZhangDepartment of Computational Biology and Bioinformatics, St Jude Children's Research Hospital, Memphis, Tennessee 38105, USA.
Li Ding
Linda Holmfeldt
Gang Wu
Sue L Heatley
Debbie Payne-Turner
John Easton
Xiang Chen
Jianmin Wang
Michael Rusch
Charles Lu
Shann-Ching Chen
Lei Wei
J Racquel Collins-Underwood
Jing Ma
Kathryn G Roberts
Stanley B Pounds
Anatoly Ulyanov
Jared Becksfort
Pankaj Gupta
Robert Huether
Richard W Kriwacki
Matthew Parker
Daniel J McGoldrick
David Zhao
Daniel Alford
Stephen Espy
Kiran Chand Bobba
Guangchun Song
Deqing Pei
Cheng Cheng
Stefan Roberts
Michael I Barbato
Dario Campana
Elaine Coustan-Smith
Sheila A Shurtleff
Susana C Raimondi
Maria Kleppe
Jan Cools
Kristin A Shimano
Michelle L Hermiston
Sergei Doulatov
Kolja Eppert
Elisa Laurenti
Faiyaz Notta
John E Dick
Giuseppe Basso
Stephen P Hunger
Mignon L Loh
Meenakshi Devidas
Brent Wood
Stuart Winter
Kimberley P Dunsmore
Robert S Fulton
Lucinda L Fulton
Xin Hong
Christopher C Harris
David J Dooling
Kerri Ochoa
Kimberly J Johnson
John C Obenauer
William E Evans
Ching-Hon Pui
Clayton W Naeve
Timothy J Ley
Elaine R Mardis
Richard K Wilson
James R Downing
Charles G Mullighan

Funding

Large Scale Genome SequencingU54HG003079 · NHGRI · WASHINGTON UNIVERSITY · PI DUTCHER, SUSAN K · 2004 to 2016
$445.7M
COG FOREIGN ACCRUALU10CA098543 · NCI · NATIONAL CHILDHOOD CANCER FOUNDATION · PI ADAMSON, PETER C. · 2003 to 2013
$335.5M
Viral Vector Technology (VVTSR)P30CA021765 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI CHARLES ROBERTS · 1985 to 2026
$166.9M
Children's Oncology Group Statistics &Data Center GrantU10CA098413 · NCI · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI DEVIDAS, MEENAKSHI · 2003 to 2013
$67.5M
Support for Human Specimen Banking in NCI-Supported Cancer Clinical TrialsU24CA114766 · NCI · RESEARCH INST NATIONWIDE CHILDREN'S HOSP · PI RAMIREZ MILAN, NILSA DEL CARMEN · 2005 to 2014
$14.5M
PAARK4Kids-Pharmacogenomics of Anticancer Agents Research in ChildrenU01GM092666 · NIGMS · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI RELLING, MARY V · 2010 to 2014
$8.9M
PROFESSIONAL ONCOLOGY EDUCATION PROGRAMR25CA023944 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI SUZANNE A. GRONEMEYER · 1986 to 2026
$8.3M
Research Training in Childhood CancerT32CA128583 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Eric Alejandro Sweet-Cordero · 2007 to 2026
$6.0M
NCI NIH HHS CA114766NCI NIH HHS CA98413NCI NIH HHS CA98543NCI NIH HHS P30 CA021765NCI NIH HHS P30CA021765NCI NIH HHS R25 CA023944NCI NIH HHS T32 CA128583NCI NIH HHS U10 CA098413NCI NIH HHS U10 CA098543NCI NIH HHS U24 CA114766NHGRI NIH HHS U54 HG003079NIGMS NIH HHS U01 GM092666NIGMS NIH HHS U01GM92666
6 · The paper itself

Abstract

Early T-cell precursor acute lymphoblastic leukaemia (ETP ALL) is an aggressive malignancy of unknown genetic basis. We performed whole-genome sequencing of 12 ETP ALL cases and assessed the frequency of the identified somatic mutations in 94 T-cell acute lymphoblastic leukaemia cases. ETP ALL was characterized by activating mutations in genes regulating cytokine receptor and RAS signalling (67% of cases; NRAS, KRAS, FLT3, IL7R, JAK3, JAK1, SH2B3 and BRAF), inactivating lesions disrupting haematopoietic development (58%; GATA3, ETV6, RUNX1, IKZF1 and EP300) and histone-modifying genes (48%; EZH2, EED, SUZ12, SETD2 and EP300). We also identified new targets of recurrent mutation including DNM2, ECT2L and RELN. The mutational spectrum is similar to myeloid tumours, and moreover, the global transcriptional profile of ETP ALL was similar to that of normal and myeloid leukaemia haematopoietic stem cells. These findings suggest that addition of myeloid-directed therapies might improve the poor outcome of ETP ALL.

Indexed as

Age of OnsetChildDNA Copy Number VariationsGenes, rasGenetic Predisposition to DiseaseGenome, HumanGenomicsHematopoiesisHistonesHumansJanus KinasesLeukemia, Myeloid, AcuteMolecular Sequence DataMutationPrecursor T-Cell Lymphoblastic Leukemia-LymphomaReceptors, Interleukin-7HistonesJanus KinasesReceptors, Interleukin-7Reelin ProteinRELN protein, human

Identifiers

PMID22237106
PMCPMC3267575

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.