Evidence map›Paper›PMID 22235357›Full record

ArticlePLoS neglected tropical diseases2012

The genetic and molecular basis of O-antigenic diversity in Burkholderia pseudomallei lipopolysaccharide.

Apichai Tuanyok, Joshua K Stone, Mark Mayo, Mirjam Kaestli, Jeffrey Gruendike, Shalamar Georgia, Stephanie Warrington, Travis Mullins, Christopher J Allender, David M Wagner and 4 more

Open access · goldAbstract read
In one paragraph

Article in PLoS neglected tropical diseases, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 63 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
63citing papers in PubMed, 1 pooled it
4.7field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

63 citing papers in PubMed, 1 synthesis or guideline pooled it, 105 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Laboratory diagnosis of melioidosis.PLoS neglected tropical diseases · 2025
    Review
  5. Article
  6. Virulence and genome analysis of three historicalFrontiers in cellular and infection microbiology · 2025
    Article
  7. Molecular epidemiology ofInfectious medicine · 2024
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  8. Review
  9. Article
  10. The Genomic Epidemiology of ClinicalPathogens (Basel, Switzerland) · 2024
    Article
  11. Article
  12. Vaccines · 2024
    Review
  13. Article
  14. Article
  15. Variable Virulence Genes in Clinical Isolates ofJournal of laboratory physicians · 2023
    Article
  16. Review
  17. Article
  18. Article
  19. Frontiers in veterinary science · 2022
    Article
  20. Article

3 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 3 countries.

Apichai TuanyokDepartment of Biological Sciences, Northern Arizona University, Flagstaff, Arizona, USA. Apichai.Tuanyok@nau.edu
Joshua K Stone
Mark Mayo
Mirjam Kaestli
Jeffrey Gruendike
Shalamar Georgia
Stephanie Warrington
Travis Mullins
Christopher J Allender
David M Wagner
Narisara Chantratita
Sharon J Peacock
Bart J Currie
Paul Keim
Northern Arizona University · USMenzies School of Health Research · AUMahidol Oxford Tropical Medicine Research Unit · TH

Funding

Vaccines and Diagnostics TrialsU54AI065359 · NIAID · UNIVERSITY OF CALIFORNIA-IRVINE · PI BARBOUR, ALAN G. · 2005 to 2013
$88.8M
Burkholderia: International Collaborative Development of Novel DiagnosticsU01AI075568 · NIAID · TRANSLATIONAL GENOMICS RESEARCH INST · PI KEIM, PAUL STEPHEN · 2007 to 2011
$4.5M
NIAID NIH HHS U01 AI-075568NIAID NIH HHS U01 AI075568NIAID NIH HHS U54 AI-065359NIAID NIH HHS U54 AI065359Wellcome Trust 089275
6 · The paper itself

Abstract

Lipopolysaccharide (LPS) is one of the most important virulence and antigenic components of Burkholderia pseudomallei, the causative agent of melioidosis. LPS diversity in B. pseudomallei has been described as typical, atypical or rough, based upon banding patterns on SDS-PAGE. Here, we studied the genetic and molecular basis of these phenotypic differences. Bioinformatics was used to determine the diversity of genes known or predicted to be involved in biosynthesis of the O-antigenic moiety of LPS in B. pseudomallei and its near-relative species. Multiplex-PCR assays were developed to target diversity of the O-antigen biosynthesis gene patterns or LPS genotypes in B. pseudomallei populations. We found that the typical LPS genotype (LPS genotype A) was highly prevalent in strains from Thailand and other countries in Southeast Asia, whereas the atypical LPS genotype (LPS genotype B) was most often detected in Australian strains (~13.8%). In addition, we report a novel LPS ladder pattern, a derivative of the atypical LPS phenotype, associated with an uncommon O-antigen biosynthesis gene cluster that is found in only a small B. pseudomallei sub-population. This new LPS group was designated as genotype B2. We also report natural mutations in the O-antigen biosynthesis genes that potentially cause the rough LPS phenotype. We postulate that the diversity of LPS may correlate with differential immunopathogenicity and virulence among B. pseudomallei strains.

Indexed as

Antigenic VariationAsia, SoutheasternAustraliaBurkholderia pseudomalleiComputational BiologyDNA, BacterialGenotypeHumansLipopolysaccharidesMelioidosisMolecular Sequence DataMultiplex Polymerase Chain ReactionO AntigensSequence AlignmentSequence Analysis, DNASequence Homology, Nucleic AcidDNA, BacterialLipopolysaccharidesO Antigens

Identifiers

PMID22235357
PMCPMC3250505
OpenAlexW2015814703

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.