Evidence map›Paper›PMID 22235264›Full record

ArticlePloS one2012

Using the Tg(nrd:egfp)/albino zebrafish line to characterize in vivo expression of neurod.

Jennifer L Thomas, Margaret J Ochocinska, Peter F Hitchcock, Ryan Thummel

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 32 citations in OpenAlex.

  1. Article
  2. Deficiency of AP1 ComplexInternational journal of molecular sciences · 2023
    Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. The Downregulation ofFrontiers in cell and developmental biology · 2020
    Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Actin-Cytoskeleton- and Rock-Mediated INM Are Required for Photoreceptor Regeneration in the Adult Zebrafish Retina.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2015
    Article
  13. Article
  14. In Vivo Time-Lapse Imaging in the Zebrafish Lateral Line: A Flexible, Open-Ended Research Project for an Undergraduate Neurobiology Laboratory Course.Journal of undergraduate neuroscience education : JUNE : a publication of FUN, Faculty for Undergraduate Neuroscience · 2015
    Article
  15. Article
  16. Article
  17. Review
  18. NeuroD modulates opioid agonist-selective regulation of adult neurogenesis and contextual memory extinction.Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology · 2013
    Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Jennifer L ThomasDepartment of Anatomy and Cell Biology and Department of Ophthalmology, Wayne State University School of Medicine, Detroit, Michigan, United States of America.
Margaret J Ochocinska
Peter F Hitchcock
Ryan Thummel
Michigan United · USUniversity of Michigan–Ann Arbor · USWayne State University · US

Funding

VIVARIUM MODULEP30EY007003 · NEI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI David Antonetti · 1987 to 2026
$17.6M
VISION RESEARCH--COREP30EY004068 · NEI · WAYNE STATE UNIVERSITY · PI LINDA D HAZLETT · 1985 to 2026
$13.2M
RETINAL DEVELOPMENT--DENDRITIC GROWTH SYNAPSER01EY007060 · NEI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI HITCHCOCK, PETER F · 1987 to 2021
$7.0M
Genetic Hierarchy Underlying Photoreceptor RegenerationR01EY018417 · NEI · UNIVERSITY OF NOTRE DAME · PI HYDE, DAVID R, THUMMEL, RYAN · 2009 to 2012
$1.3M
The platinum zebrafish is a model for studying vision defects caused by albinismR21EY019401 · NEI · WAYNE STATE UNIVERSITY · PI THUMMEL, RYAN, VIHTELIC, THOMAS S · 2009 to 2010
$413k
NEI NIH HHS P30 EY004068NEI NIH HHS P30 EY007003NEI NIH HHS P30EY04068NEI NIH HHS P30EY07003NEI NIH HHS R01 EY007060NEI NIH HHS R01 EY018417NEI NIH HHS R01EY018417NEI NIH HHS R01EY07060NEI NIH HHS R21 EY019401NEI NIH HHS R21EY019401
6 · The paper itself

Abstract

In this study, we used a newly-created transgenic zebrafish, Tg(nrd:egfp)/albino, to further characterize the expression of neurod in the developing and adult retina and to determine neurod expression during adult photoreceptor regeneration. We also provide observations regarding the expression of neurod in a variety of other tissues. In this line, EGFP is found in cells of the developing and adult retina, pineal gland, cerebellum, olfactory bulbs, midbrain, hindbrain, neural tube, lateral line, inner ear, pancreas, gut, and fin. Using immunohistochemistry and in situ hybridization, we compare the expression of the nrd:egfp transgene to that of endogenous neurod and to known retinal cell types. Consistent with previous data based on in situ hybridizations, we show that during retinal development, the nrd:egfp transgene is not expressed in proliferating retinal neuroepithelium, and is expressed in a subset of retinal neurons. In contrast to previous studies, nrd:egfp is gradually re-expressed in all rod photoreceptors. During photoreceptor regeneration in adult zebrafish, in situ hybridization reveals that neurod is not expressed in Müller glial-derived neuronal progenitors, but is expressed in photoreceptor progenitors as they migrate to the outer nuclear layer and differentiate into new rod photoreceptors. During photoreceptor regeneration, expression of the nrd:egfp matches that of neurod. We conclude that Tg(nrd:egfp)/albino is a good representation of endogenous neurod expression, is a useful tool to visualize neurod expression in a variety of tissues and will aid investigating the fundamental processes that govern photoreceptor regeneration in adults.

Indexed as

AnimalsAnimals, Genetically ModifiedBasic Helix-Loop-Helix ProteinsCell CycleCell DifferentiationEmbryonic DevelopmentGene ExpressionLightNerve Tissue ProteinsPhotoreceptor CellsRegenerationZebrafishBasic Helix-Loop-Helix ProteinsNerve Tissue ProteinsNeurogenic differentiation factor 1

Identifiers

PMID22235264
PMCPMC3250405
OpenAlexW2086190480

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.