Evidence map›Paper›PMID 22234157›Full record

ArticleEuropean journal of human genetics : EJHG2012

Genomic imbalances detected by array-CGH in patients with syndromal ocular developmental anomalies.

Andrée Delahaye, Pierre Bitoun, Séverine Drunat, Marion Gérard-Blanluet, Nicolas Chassaing, Annick Toutain, Alain Verloes, Frédérique Gatelais, Marie Legendre, Laurence Faivre and 11 more

Open access · bronzeAbstract read
In one paragraph

Article in European journal of human genetics : EJHG, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.2field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
  2. Article
  3. International journal of molecular sciences · 2021
    Article
  4. Article
  5. Review
  6. Article
  7. Haploinsufficiency ofMolecular cytogenetics · 2017
    Article
  8. Review
  9. Genetic Advances in Microphthalmia.Journal of pediatric genetics · 2016
    Review
  10. Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 11 institutions in 1 country.

Andrée DelahayeAP-HP, Hôpital Jean Verdier, Service d'Histologie, Embryologie, et Cytogénétique, Bondy, France. andree.delahaye@jvr.aphp.fr
Pierre Bitoun
Séverine Drunat
Marion Gérard-Blanluet
Nicolas Chassaing
Annick Toutain
Alain Verloes
Frédérique Gatelais
Marie Legendre
Laurence Faivre
Sandrine Passemard
Azzedine Aboura
Sophie Kaltenbach
Samuel Quentin
Céline Dupont
Anne-Claude Tabet
Serge Amselem
Jacques Elion
Pierre Gressens
Eva Pipiras
Brigitte Benzacken
Assistance Publique – Hôpitaux de Paris · FRHôpital Robert-Debré · FRCentre Hospitalier Universitaire d'Angers · FRUniversité Paris Cité · FRCentre Hospitalier Universitaire de Tours · FRCentre Hospitalier Universitaire Dijon Bourgogne · FRHôpital Jean-Verdier · FRHôpital Purpan · FRHôpital Saint-Louis · FRInserm · FRSorbonne Université · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In 65 patients, who had unexplained ocular developmental anomalies (ODAs) with at least one other birth defect and/or intellectual disability, we performed oligonucleotide comparative genome hybridisation-based microarray analysis (array-CGH; 105A or 180K, Agilent Technologies). In four patients, array-CGH identified clinically relevant deletions encompassing a gene known to be involved in ocular development (FOXC1 or OTX2). In four other patients, we found three pathogenic deletions not classically associated with abnormal ocular morphogenesis, namely, del(17)(p13.3p13.3), del(10)(p14p15.3), and del(16)(p11.2p11.2). We also detected copy number variations of uncertain pathogenicity in two other patients. Rearranged segments ranged in size from 0.04 to 5.68 Mb. These results show that array-CGH provides a high diagnostic yield (15%) in patients with syndromal ODAs and can identify previously unknown chromosomal regions associated with these conditions. In addition to their importance for diagnosis and genetic counselling, these data may help identify genes involved in ocular development.

Indexed as

Genome, HumanAdolescentAdultChildChromosome AberrationsComparative Genomic HybridizationEye AbnormalitiesFemaleForkhead Transcription FactorsGene DosageHumansMaleOtx Transcription FactorsSyndromeForkhead Transcription FactorsFOXC1 protein, humanOTX2 protein, humanOtx Transcription Factors

Identifiers

PMID22234157
PMCPMC3330214
OpenAlexW1965150063

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.