Evidence map›Paper›PMID 22232161›Full record

ArticleActa crystallographica. Section F, Structural biology and crystallization communications2012

Structural insights into RipC, a putative citrate lyase β subunit from a Yersinia pestis virulence operon.

Rodrigo Torres, Nicholas Chim, Banumathi Sankaran, Céline Pujol, James B Bliska, Celia W Goulding

Open access · bronzeAbstract read
In one paragraph

Article in Acta crystallographica. Section F, Structural biology and crystallization communications, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.8field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 20 citations in OpenAlex.

  1. Thioesterase enzyme families: Functions, structures, and mechanisms.Protein science : a publication of the Protein Society · 2022
    Article
  2. Article
  3. An essential bifunctional enzyme inProceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  4. Editorial: Cellular and Molecular Mechanisms ofFrontiers in cellular and infection microbiology · 2019
    Article
  5. CitE Enzymes Are Essential forFrontiers in cellular and infection microbiology · 2018
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Rodrigo TorresDepartment of Molecular Biology and Biochemistry, University of California, Irvine, CA 92697, USA.
Nicholas Chim
Banumathi Sankaran
Céline Pujol
James B Bliska
Celia W Goulding
University of California, Irvine · USStony Brook University · USLawrence Berkeley National Laboratory · US

Funding

Viral Pathogenesis and TherapeuticsU54AI057158 · NIAID · WADSWORTH CENTER · PI LIPKIN, W. IAN · 2003 to 2014
$100.8M
Vaccines and Diagnostics TrialsU54AI065359 · NIAID · UNIVERSITY OF CALIFORNIA-IRVINE · PI BARBOUR, ALAN G. · 2005 to 2013
$88.8M
Virulence Mechanism of Y. pestis and tularensisP01AI055621 · NIAID · STATE UNIVERSITY NEW YORK STONY BROOK · PI BENACH, JORGE L. · 2004 to 2010
$20.7M
NIAID NIH HHS AI055621NIAID NIH HHS AI-65359NIAID NIH HHS P01 AI055621NIAID NIH HHS U54 AI057158NIAID NIH HHS U54-AI057158NIAID NIH HHS U54 AI065359
6 · The paper itself

Abstract

Yersinia pestis remains a threat, with outbreaks of plague occurring in rural areas and its emergence as a weapon of bioterrorism; thus, an improved understanding of its various pathogenicity pathways is warranted. The rip (required for intracellular proliferation) virulence operon is required for Y. pestis survival in interferon-γ-treated macrophages and has been implicated in lowering macrophage-produced nitric oxide levels. RipC, one of three gene products from the rip operon, is annotated as a citrate lyase β subunit. Furthermore, the Y. pestis genome lacks genes that encode citrate lyase α and γ subunits, suggesting a unique functional role of RipC in the Y. pestis rip-mediated survival pathway. Here, the 2.45 Å resolution crystal structure of RipC revealed a homotrimer in which each monomer consists of a (β/α)(8) TIM-barrel fold. Furthermore, the trimeric state was confirmed in solution by size-exclusion chromatography. Through sequence and structure comparisons with homologous proteins, it is proposed that RipC is a putative CoA- or CoA-derivative binding protein.

Indexed as

Amino Acid SequenceCrystallography, X-RayModels, MolecularMolecular Sequence DataMultienzyme ComplexesOperonOxo-Acid-LyasesProtein Structure, QuaternaryProtein Structure, TertiaryProtein SubunitsSequence AlignmentVirulenceYersinia pestiscitrate (pro-3S)-lyaseMultienzyme ComplexesOxo-Acid-LyasesProtein Subunits

Identifiers

PMID22232161
PMCPMC3253824
OpenAlexW2009829937

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.