Evidence map›Paper›PMID 22228831›Full record

ArticleNucleic acids research2012

XRCC4's interaction with XLF is required for coding (but not signal) end joining.

Sunetra Roy, Sara N Andres, Alexandra Vergnes, Jessica A Neal, Yao Xu, Yaping Yu, Susan P Lees-Miller, Murray Junop, Mauro Modesti, Katheryn Meek

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
3.9field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 68 citations in OpenAlex.

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  17. Multifaceted Fanconi Anemia Signaling.Trends in genetics : TIG · 2018
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 5 countries.

Sunetra RoyCollege of Veterinary Medicine and Departments of Microbiology & Molecular Genetics, Michigan State University, East Lansing, Michigan 48824, USA.
Sara N Andres
Alexandra Vergnes
Jessica A Neal
Yao Xu
Yaping Yu
Susan P Lees-Miller
Murray Junop
Mauro Modesti
Katheryn Meek
Laboratory of Molecular Genetics · PLAix-Marseille Université · FRMcMaster University · CAUniversity of Calgary · CAMichigan State University · US

Funding

Relevant Targets of the DNA Dependent Protein KinaseR01AI048758 · NIAID · MICHIGAN STATE UNIVERSITY · PI MEEK, KATHERYN D · 2000 to 2016
$5.2M
NIAID NIH HHS AI048758NIAID NIH HHS R01 AI048758PHS HHS MOP 89903Worldwide Cancer Research 09-0633
6 · The paper itself

Abstract

XRCC4 and XLF are structurally related proteins important for DNA Ligase IV function. XRCC4 forms a tight complex with DNA Ligase IV while XLF interacts directly with XRCC4. Both XRCC4 and XLF form homodimers that can polymerize as heterotypic filaments independently of DNA Ligase IV. Emerging structural and in vitro biochemical data suggest that XRCC4 and XLF together generate a filamentous structure that promotes bridging between DNA molecules. Here, we show that ablating XRCC4's affinity for XLF results in DNA repair deficits including a surprising deficit in VDJ coding, but not signal end joining. These data are consistent with a model whereby XRCC4/XLF complexes hold DNA ends together--stringently required for coding end joining, but dispensable for signal end joining. Finally, DNA-PK phosphorylation of XRCC4/XLF complexes disrupt DNA bridging in vitro, suggesting a regulatory role for DNA-PK's phosphorylation of XRCC4/XLF complexes.

Indexed as

DNA End-Joining RepairV(D)J RecombinationAnimalsCell LineCell SurvivalCHO CellsCricetinaeCricetulusDNADNA-Activated Protein KinaseDNA-Binding ProteinsDNA DamageDNA Ligase ATPDNA LigasesDNA Repair EnzymesHumansDNADNA-Activated Protein KinaseDNA-Binding ProteinsDNA Ligase ATPDNA LigasesDNA Repair EnzymesLIG4 protein, humanNHEJ1 protein, humanXRCC4 protein, human

Identifiers

PMID22228831
PMCPMC3287172
OpenAlexW2102329938

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.