Evidence map›Paper›PMID 22224469›Full record

ArticleBiochemistry2012

Structural and biophysical insights into the ligand-free Pitx2 homeodomain and a ring dermoid of the cornea inducing homeodomain mutant.

Thomas Doerdelmann, Douglas J Kojetin, Jamie M Baird-Titus, Laura A Solt, Thomas P Burris, Mark Rance

Abstract read
In one paragraph

Article in Biochemistry, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.3field-weighted citation impact, top 42% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 8 citations in OpenAlex.

  1. Melatonin Alleviates Oxidative Stress Induced by HAntioxidants (Basel, Switzerland) · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Thomas DoerdelmannDepartment of Molecular Genetics, Biochemistry and Microbiology, University of Cincinnati, Cincinnati, Ohio 45267, United States.
Douglas J Kojetin
Jamie M Baird-Titus
Laura A Solt
Thomas P Burris
Mark Rance
Scripps Research Institute · USSabin Vaccine Institute · USMount St. Joseph University · US

Funding

ENVIRONMETAL CARCINOGENESIS AND MUTAGENESIST32ES007250 · NIEHS · UNIVERSITY OF CINCINNATI · PI MILLER, WILLIAM E · 1988 to 2024
$11.9M
TRAINING IN CARDIOVASCULAR BIOLOGYT32HL007382 · NHLBI · UNIVERSITY OF CINCINNATI · PI SCHWARTZ, ARNOLD · 1985 to 2012
$5.9M
Protein Dynamics in Homeodomain/DNA ComplexesR01GM063855 · NIGMS · UNIVERSITY OF CINCINNATI · PI RANCE, MARK A · 2003 to 2012
$2.6M
Regulation of REV-ERBalpha and REV-ERBbeta function of HEMER01DK080201 · NIDDK · SCRIPPS RESEARCH INSTITUTE, THE · PI BURRIS, THOMAS P · 2008 to 2012
$1.9M
Training in Biologic Threat AgentsT32AI055406 · NIAID · UNIVERSITY OF CINCINNATI · PI WEISS, ALISON A. · 2003 to 2007
$1.5M
800 MHz NMR console replacementS10RR027755 · NCRR · UNIVERSITY OF CINCINNATI · PI RANCE, MARK A · 2010 to 2010
$358k
CRYOPROBE FOR 800 MHZ NMR SPECT: STRUC BIOL: BACTERIAL PROTEINS, CARDIAC MUSCLE S10RR019077 · NCRR · UNIVERSITY OF CINCINNATI · PI RANCE, MARK A · 2004 to 2004
$345k
NCRR NIH HHS RR027755NCRR NIH HHS RR19077NCRR NIH HHS S10 RR019077NCRR NIH HHS S10 RR027755NHLBI NIH HHS HL007382NHLBI NIH HHS T32 HL007382NIAID NIH HHS AI055406NIAID NIH HHS T32 AI055406NIDDK NIH HHS R01 DK080201NIEHS NIH HHS ES007250NIEHS NIH HHS T32 ES007250NIGMS NIH HHS GM063855NIGMS NIH HHS R01 GM063855
6 · The paper itself

Abstract

The homeodomain-containing transcription factor Pitx2 (pituitary homeobox protein 2) is present in many developing embryonic tissues, including the heart. Its homeodomain is responsible for the recognition and binding to target DNA sequences and thus constitutes a major functional unit in the Pitx2 protein. Nuclear magnetic resonance techniques were employed to determine the solution structure of the native Pitx2 homeodomain and a R24H mutant that causes autosomal dominantly inherited ring dermoid of the cornea syndrome. The structures reveal that both isoforms possess the canonical homeodomain fold. However, the R24H mutation results in a 2-fold increase in DNA binding affinity and a 5 °C decrease in thermal stability, while changing the dynamic environment of the homeodomain only locally. When introduced into full-length Pitx2c, the mutation results in an only 25% loss of transactivation activity. Our data correlate well with clinical observations suggesting a milder deficiency for the R24H mutation compared to those of other Pitx2 homeodomain mutations.

Indexed as

Biophysical PhenomenaMutationNuclear Magnetic Resonance, BiomolecularAmino Acid SequenceConjunctival DiseasesCorneal DiseasesDermoid CystDNAGenes, ReporterHistidineHomeobox Protein PITX2Homeodomain ProteinsHumansHydrogen-Ion ConcentrationLigandsLuciferasesDNAHistidineHomeobox Protein PITX2Homeodomain ProteinsLigandsLuciferasesSolutionsTranscription Factors

Identifiers

PMID22224469
PMCPMC3264736
OpenAlexW1998546618

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.