Evidence map›Paper›PMID 22223481›Full record

ArticleThe Journal of biological chemistry2012

Identification of a hypochlorite-specific transcription factor from Escherichia coli.

Katharina M Gebendorfer, Adrian Drazic, Yan Le, Jasmin Gundlach, Alexander Bepperling, Andreas Kastenmüller, Kristina A Ganzinger, Nathalie Braun, Titus M Franzmann, Jeannette Winter

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed, 79 citations in OpenAlex.

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  13. Transcriptomic Analysis ofAntioxidants (Basel, Switzerland) · 2022
    Article
  14. Crystal structures of YeiE fromProceedings of the National Academy of Sciences of the United States of America · 2022
    Article
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  16. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Katharina M GebendorferSection of Biotechnology, Department of Chemistry, Center for Integrated Protein Science Munich, Technische Universität München, 85747 Garching, Germany.
Adrian Drazic
Yan Le
Jasmin Gundlach
Alexander Bepperling
Andreas Kastenmüller
Kristina A Ganzinger
Nathalie Braun
Titus M Franzmann
Jeannette Winter
Technical University of Munich · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Hypochlorite is a powerful oxidant produced by neutrophils to kill invading microorganisms. Despite this important physiological role of HOCl in fighting bacterial infections, no hypochlorite-specific stress response has been identified yet. Here, we identified a hypochlorite-responsive transcription factor, YjiE, which is conserved in proteobacteria and eukaryotes. YjiE forms unusual dodecameric ring-like structures in vitro that undergo large DNA-induced conformational changes to form dimers and tetramers as shown by transmission electron microscopy and analytical ultracentrifugation. Such smaller oligomers are predominant in hypochlorite-stressed cells and are the active species as shown by fluorescence anisotropy and analytical ultracentrifugation. YjiE regulates a large number of genes upon hypochlorite stress. Among them are genes involved in cysteine, methionine biosynthesis, and sulfur metabolism (up-regulated) and genes involved in iron acquisition and homeostasis (down-regulated), thus supposedly replenishing oxidized metabolites and decreasing the hypochlorite-mediated amplification of intracellular reactive oxygen species. As a result, YjiE specifically confers hypochlorite resistance to E. coli cells. Thus, to our knowledge, YjiE is the first described hypochlorite-specific transcription factor.

Indexed as

Amino Acid SequenceDisinfectantsDNA, BacterialDNA-Binding ProteinsDrug Resistance, BacterialEscherichia coliEscherichia coli ProteinsHypochlorous AcidMolecular Sequence DataOxidative StressPhosphotransferases (Alcohol Group Acceptor)Reactive Oxygen SpeciesTranscription FactorsDisinfectantsDNA, BacterialDNA-Binding ProteinsEscherichia coli ProteinsHypochlorous AcidKptA protein, E coliPhosphotransferases (Alcohol Group Acceptor)Reactive Oxygen SpeciesTranscription Factors

Identifiers

PMID22223481
PMCPMC3307268
OpenAlexW2049646296

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.