Evidence map›Paper›PMID 22222980›Full record

ArticleElectrophoresis2012

Bleach gel: a simple agarose gel for analyzing RNA quality.

Patrick S Aranda, Dollie M LaJoie, Cheryl L Jorcyk

Abstract read
In one paragraph

Article in Electrophoresis, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 298 papers.

0numbers the graph read from it
0cells of the map it votes in
298citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

298 citing papers in PubMed.

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238 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Patrick S ArandaDepartment of Biological Sciences, Boise State University, Boise, ID 83725, USA.
Dollie M LaJoie
Cheryl L Jorcyk

Funding

UNDERGRADUATE COLLEGE OUTREACH PROGRAMP20RR016454 · NCRR · UNIVERSITY OF IDAHO · PI CHASE, JENNIFER R · 2001 to 2011
$35.3M
Oncostatin M-induced VEGF in human breast cancer is HIF1a-mediatedR15CA137510 · NCI · BOISE STATE UNIVERSITY · PI JORCYK, CHERYL LYNN · 2009 to 2009
$212k
Oncostatin M stimulates VEGF-mediated angiogenesisR15CA106274 · NCI · BOISE STATE UNIVERSITY · PI JORCYK, CHERYL LYNN · 2005 to 2005
$187k
NCI NIH HHS R15 CA106274NCI NIH HHS R15 CA137510NCRR NIH HHS P20 RR016454
6 · The paper itself

Abstract

RNA-based applications requiring high-quality, non-degraded RNA are a foundational element of many research studies. As such, it is paramount that the integrity of experimental RNA is validated prior to cDNA synthesis or other downstream applications. In the absence of expensive equipment such as microfluidic electrophoretic devices, and as an alternative to the costly and time-consuming standard formaldehyde gel, RNA quality can be quickly analyzed by adding small amounts of commercial bleach to TAE buffer-based agarose gels prior to electrophoresis. In the presence of low concentrations of bleach, the secondary structure of RNA is denatured and potential contaminating RNases are destroyed. Because of this, the 'bleach gel' is a functional approach that addresses the need for an inexpensive and safe way to evaluate RNA integrity and will improve the ability of researchers to rapidly analyze RNA quality.

Indexed as

AcetatesElectrophoresis, Agar GelEthylenediaminesNucleic Acid ConformationReproducibility of ResultsRNASodium HypochloriteAcetatesEthylenediaminesRNASodium Hypochloritetris-acetate-EDTA buffer

Identifiers

PMID22222980
PMCPMC3699176

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.