ArticleInternational journal of plant genomics2011
Chromosome visualization tool: a whole genome viewer.
Article in International journal of plant genomics, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
28 citing papers in PubMed.
- Article
- A novel tomato interspecific (Horticulture research · 2024Article
- The Ga1 locus of the genus Zea is associated with novel genome structures derived from multiple, independent nonhomologous recombination events.G3 (Bethesda, Md.) · 2023Article
- Unraveling the genetics underlying micronutrient signatures of diversity panel present in brown rice through genome-ionome linkages.The Plant journal : for cell and molecular biology · 2023Article
- Phased grapevine genome sequence of anFrontiers in plant science · 2023Article
- Partially Resistant Avocado Rootstock DusaFrontiers in plant science · 2022Article
- Aegilops tauschii genome assembly Aet v5.0 features greater sequence contiguity and improved annotation.G3 (Bethesda, Md.) · 2021Article
- GCViT: a method for interactive, genome-wide visualization of resequencing and SNP array data.BMC genomics · 2020Article
- GmSYP24, a putative syntaxin gene, confers osmotic/drought, salt stress tolerances and ABA signal pathway.Scientific reports · 2019Article
- MaizeGDB 2018: the maize multi-genome genetics and genomics database.Nucleic acids research · 2019Article
- Comparative Genomics ofG3 (Bethesda, Md.) · 2018Article
- A Mechanism for Genome Size Reduction Following Genomic Rearrangements.Frontiers in genetics · 2018Article
- RGAugury: a pipeline for genome-wide prediction of resistance gene analogs (RGAs) in plants.BMC genomics · 2016Article
- DensityMap: a genome viewer for illustrating the densities of features.BMC bioinformatics · 2016Article
- Identification and Comparative Analysis of CBS Domain-Containing Proteins in Soybean (Glycine max) and the Primary Function of GmCBS21 in Enhanced Tolerance to Low Nitrogen Stress.International journal of molecular sciences · 2016Article
- The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut.Nature genetics · 2016Article
- Whole Genome Sequence and Comparative Genomics of the Novel Lyme Borreliosis Causing Pathogen, Borrelia mayonii.PloS one · 2016Article
- Soybean (Glycine max) SWEET gene family: insights through comparative genomics, transcriptome profiling and whole genome re-sequence analysis.BMC genomics · 2015Article
- Genome wide in silico characterization of Dof gene families of pigeonpea (Cajanus cajan (L) Millsp.).Molecular biology reports · 2015Article
- Genome-wide survey of the soybean GATA transcription factor gene family and expression analysis under low nitrogen stress.PloS one · 2015Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
2 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
CViT (chromosome visualization tool) is a Perl utility for quickly generating images of features on a whole genome at once. It reads GFF3-formated data representing chromosomes (linkage groups or pseudomolecules) and sets of features on those chromosomes. It can display features on any chromosomal unit system, including genetic (centimorgan), cytological (centiMcClintock), and DNA unit (base-pair) coordinates. CViT has been used to track sequencing progress (status of genome sequencing, location and number of gaps), to visualize BLAST hits on a whole genome view, to associate maps with one another, to locate regions of repeat densities to display syntenic regions, and to visualize centromeres and knobs on chromosomes.
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.