Evidence map›Paper›PMID 22219724›Full record

ArticlePLoS computational biology2011

Radial and spiral stream formation in Proteus mirabilis colonies.

Chuan Xue, Elena O Budrene, Hans G Othmer

Open access · goldAbstract read
In one paragraph

Article in PLoS computational biology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
0.3field-weighted citation impact, top 44% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 1 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Symmetry and reduction in collectives: low-dimensional cyclic pursuit.Proceedings. Mathematical, physical, and engineering sciences · 2016
    Article
  7. Article
  8. Review
  9. Article
  10. Stochastic analysis of reaction-diffusion processes.Bulletin of mathematical biology · 2014
    Article
  11. Article
  12. Noise Induced Pattern Switching in Randomly Distributed Delayed Swarms.Proceedings of the ... American Control Conference. American Control Conference · 2013
    Article
  13. Statistical multimoment bifurcations in random-delay coupled swarms.Physical review. E, Statistical, nonlinear, and soft matter physics · 2012
    Article
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 3 institutions in 1 country.

Chuan XueMathematical Biosciences Institute, the Ohio State University, Columbus, Ohio, United States of America. cxue@mbi.osu.edu
Elena O Budrene
Hans G Othmer
Massachusetts Institute of Technology · USThe Ohio State University · USUniversity of Minnesota · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The enteric bacterium Proteus mirabilis, which is a pathogen that forms biofilms in vivo, can swarm over hard surfaces and form a variety of spatial patterns in colonies. Colony formation involves two distinct cell types: swarmer cells that dominate near the surface and the leading edge, and swimmer cells that prefer a less viscous medium, but the mechanisms underlying pattern formation are not understood. New experimental investigations reported here show that swimmer cells in the center of the colony stream inward toward the inoculation site and in the process form many complex patterns, including radial and spiral streams, in addition to previously-reported concentric rings. These new observations suggest that swimmers are motile and that indirect interactions between them are essential in the pattern formation. To explain these observations we develop a hybrid model comprising cell-based and continuum components that incorporates a chemotactic response of swimmers to a chemical they produce. The model predicts that formation of radial streams can be explained as the modulation of the local attractant concentration by the cells, and that the chirality of the spiral streams results from a swimming bias of the cells near the surface of the substrate. The spatial patterns generated from the model are in qualitative agreement with the experimental observations.

Indexed as

BiofilmsAlgorithmsBacillus subtilisChemotaxisComputational BiologyEscherichia coliModels, BiologicalModels, StatisticalMovementProteus mirabilisSalmonella typhimurium

Identifiers

PMID22219724
PMCPMC3248392
OpenAlexW1500587650

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.