Evidence map›Paper›PMID 22219195›Full record

ArticleThe Journal of biological chemistry2012

Structural link between γ-aminobutyric acid type A (GABAA) receptor agonist binding site and inner β-sheet governs channel activation and allosteric drug modulation.

Srinivasan P Venkatachalan, Cynthia Czajkowski

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
0.7field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 25 citations in OpenAlex.

  1. A pore-facing glycan constrains GABACommunications biology · 2026
    Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Review
  7. GABABiophysical journal · 2024
    Article
  8. Review
  9. Biomolecules · 2023
    Article
  10. Review
  11. Article
  12. Modulation of theeLife · 2020
    Article
  13. Article
  14. An intersubunit electrostatic interaction in the GABAThe Journal of biological chemistry · 2018
    Article
  15. GABAScientific reports · 2017
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Signal transmission within the P2X2 trimeric receptor.The Journal of general physiology · 2014
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Srinivasan P VenkatachalanDepartment of Neuroscience, University of Wisconsin-Madison, Madison, Wisconsin 53711, USA.
Cynthia Czajkowski
University of Wisconsin–Madison · US

Funding

STRUCTURE OF THE GABA A RECEPTOR BINDING SITESR01NS034727 · NINDS · UNIVERSITY OF WISCONSIN-MADISON · PI CZAJKOWSKI, CYNTHIA M · 1997 to 2016
$6.1M
NINDS NIH HHS R01 NS034727PHS HHS 34727
6 · The paper itself

Abstract

Rapid opening and closing of pentameric ligand-gated ion channels (pLGICs) regulate information flow throughout the brain. For pLGICs, it is postulated that neurotransmitter-induced movements in the extracellular inner β-sheet trigger channel activation. Homology modeling reveals that the β4-β5 linker physically connects the neurotransmitter binding site to the inner β-sheet. Inserting 1, 2, 4, and 8 glycines in this region of the GABA(A) receptor β-subunit progressively decreases GABA activation and converts the competitive antagonist SR-95531 into a partial agonist, demonstrating that this linker is a key element whose length and flexibility are optimized for efficient signal propagation. Insertions in the α- and γ-subunits have little effect on GABA or SR-95531 actions, suggesting that asymmetric motions in the extracellular domain power pLGIC gating. The effects of insertions on allosteric modulator actions, pentobarbital, and benzodiazepines, have different subunit dependences, indicating that modulator-induced signaling is distinct from agonist gating.

Indexed as

Drug DesignAllosteric RegulationAmino Acid SequenceAnimalsBenzodiazepinesBinding SitesGABA AgonistsGABA AntagonistsGABA Modulatorsgamma-Aminobutyric AcidGlycineMolecular Sequence DataOocytesPentobarbitalProtein Structure, SecondaryPyridazinesBenzodiazepinesGABA AgonistsGABA AntagonistsGABA Modulatorsgabazinegamma-Aminobutyric AcidGlycinePentobarbitalPyridazinesReceptors, GABA-A

Identifiers

PMID22219195
PMCPMC3307325
OpenAlexW2037966901

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.