Evidence map›Paper›PMID 22218741›Full record

ArticleNeurogenetics2012

Genotype-phenotype correlation in interstitial 6q deletions: a report of 12 new cases.

Jill A Rosenfeld, Dina Amrom, Eva Andermann, Frederick Andermann, Martin Veilleux, Cynthia Curry, Jamie Fisher, Stephen Deputy, Arthur S Aylsworth, Cynthia M Powell and 18 more

Abstract read
PubMed Publisher
In one paragraph

Article in Neurogenetics, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 53 citations in OpenAlex.

  1. Article
  2. Review
  3. DHDDS and NUS1: A Converging Pathway and Common Phenotype.Movement disorders clinical practice · 2024
    Review
  4. Review
  5. Case report: A newFrontiers in genetics · 2023
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. 6q22.1 microdeletion and susceptibility to pediatric epilepsy.European journal of human genetics : EJHG · 2015
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

28 authors at 14 institutions in 2 countries.

Jill A RosenfeldSignature Genomic Laboratories, PerkinElmer, Inc., 2820 N. Astor St., Spokane, WA 99207, USA.
Dina Amrom
Eva Andermann
Frederick Andermann
Martin Veilleux
Cynthia Curry
Jamie Fisher
Stephen Deputy
Arthur S Aylsworth
Cynthia M Powell
Kandamurugu Manickam
Bryce Heese
Melissa Maisenbacher
Cathy Stevens
Jay W Ellison
Sheila Upton
John Moeschler
Wilfredo Torres-Martinez
Abby Stevens
Robert Marion
Elaine Maria Pereira
Melanie Babcock
Bernice Morrow
Trilochan Sahoo
Allen N Lamb
Blake C Ballif
Alex R Paciorkowski
Lisa G Shaffer
PerkinElmer (United States) · USUniversity of North Carolina at Chapel Hill · USAlbert Einstein College of Medicine · USCalifornia State University, Fresno · USChildren's Hospital at Montefiore · USDartmouth–Hitchcock Medical Center · USIndiana University School of MedicineMcGill University · CAMontreal Neurological Institute and Hospital · CAUniversity of Florida · USChildren’s Hospital at Erlanger · USChildren's Hospital of New Orleans · USMayo Clinic · USSeattle Children's Hospital · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Interstitial deletions of 6q are associated with variable phenotypes, including growth retardation, dysmorphic features, upper limb malformations, and Prader-Willi (PW)-like features. Only a minority of cases in the literature have been characterized with high resolution techniques, making genotype-phenotype correlations difficult. We report 12 individuals with overlapping, 200-kb to 16.4-Mb interstitial deletions within 6q15q22.33 characterized by microarray-based comparative genomic hybridization to better correlate deletion regions with specific phenotypes. Four individuals have a PW-like phenotype, though only two have deletion of SIM1, the candidate gene for this feature. Therefore, other genes on 6q may contribute to this phenotype including multiple genes on 6q16 and our newly proposed candidate, the transcription cofactor gene VGLL2 on 6q22.2. Two individuals present with movement disorders as a major feature, and ataxia is present in a third. The 4.1-Mb 6q22.1q22.2 critical region for movement disorders includes the cerebellar-expressed candidate gene GOPC. Observed brain malformations include thick corpus callosum in two subjects, cerebellar vermal hypoplasia in two subjects, and cerebellar atrophy in one subject. Seven subjects' deletions overlap a ~250-kb cluster of four genes on 6q22.1 including MARCKS, HDAC2, and HS3ST5, which are involved in neural development. Two subjects have only this gene cluster deleted, and one deletion was apparently de novo, suggesting at least one of these genes plays an important role in development. Although the phenotypes associated with 6q deletions can vary, using overlapping deletions to delineate critical regions improves genotype-phenotype correlation for interstitial 6q deletions.

Indexed as

Genetic Association StudiesAbnormalities, MultipleAdultChildChild, PreschoolChromosome DeletionChromosomes, Human, Pair 6Computational BiologyDevelopmental DisabilitiesFemaleHumansInfantIn Situ Hybridization, FluorescenceMaleMicroarray AnalysisYoung Adult

Identifiers

PMID22218741
OpenAlexW1984533201

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.