Evidence map›Paper›PMID 22217245›Full record

ArticleJournal of proteome research2012

Proteomic analysis of Sulfolobus solfataricus during Sulfolobus Turreted Icosahedral Virus infection.

Walid S Maaty, Kyla Selvig, Stephanie Ryder, Pavel Tarlykov, Jonathan K Hilmer, Joshua Heinemann, Joseph Steffens, Jamie C Snyder, Alice C Ortmann, Navid Movahed and 7 more

Abstract read
In one paragraph

Article in Journal of proteome research, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
4.1field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 27 citations in OpenAlex.

  1. Article
  2. Viruses of theFrontiers in microbiology · 2023
    Review
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Functional interplay between a virus and the ESCRT machinery in archaea.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Article
  9. Article
  10. Article
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 2 institutions in 1 country.

Walid S MaatyDepartment of Chemistry and Biochemistry, Montana State University, Bozeman, Montana, United States.
Kyla Selvig
Stephanie Ryder
Pavel Tarlykov
Jonathan K Hilmer
Joshua Heinemann
Joseph Steffens
Jamie C Snyder
Alice C Ortmann
Navid Movahed
Kevin Spicka
Lakshindra Chetia
Paul A Grieco
Edward A Dratz
Trevor Douglas
Mark J Young
Brian Bothner
Montana State University · USUniversity of South Alabama · US

Funding

SYSTEMS BIOLOGY OF HOST-PATHOGEN INTERACTIONSP20RR024237 · NCRR · MONTANA STATE UNIVERSITY - BOZEMAN · PI GAUSS, KATHERINE A. · 2008 to 2011
$8.1M
MULTI-USER COMPUTER SYSTEM FOR AUDITORY RESEARCHS10RR002437 · NCRR · MASSACHUSETTS EYE AND EAR INFIRMARY · PI KIANG, NELSON Y · 1985 to 1985
–
NCRR NIH HHS 5P20RR02437NCRR NIH HHS P20 RR024237
6 · The paper itself

Abstract

Where there is life, there are viruses. The impact of viruses on evolution, global nutrient cycling, and disease has driven research on their cellular and molecular biology. Knowledge exists for a wide range of viruses; however, a major exception are viruses with archaeal hosts. Archaeal virus-host systems are of great interest because they have similarities to both eukaryotic and bacterial systems and often live in extreme environments. Here we report the first proteomics-based experiments on archaeal host response to viral infection. Sulfolobus Turreted Icosahedral Virus (STIV) infection of Sulfolobus solfataricus P2 was studied using 1D and 2D differential gel electrophoresis (DIGE) to measure abundance and redox changes. Cysteine reactivity was measured using novel fluorescent zwitterionic chemical probes that, together with abundance changes, suggest that virus and host are both vying for control of redox status in the cells. Proteins from nearly 50% of the predicted viral open reading frames were found along with a new STIV protein with a homologue in STIV2. This study provides insight to features of viral replication novel to the archaea, makes strong connections to well-described mechanisms used by eukaryotic viruses such as ESCRT-III mediated transport, and emphasizes the complementary nature of different omics approaches.

Indexed as

Amino Acid SequenceArchaeal ProteinsArchaeal VirusesChromatography, LiquidElectrophoresis, Gel, Two-DimensionalHost-Pathogen InteractionsMolecular Sequence DataProteomicsSequence AlignmentSulfolobus solfataricusTandem Mass SpectrometryVirus ReplicationArchaeal Proteins

Identifiers

PMID22217245
PMCPMC3339632
OpenAlexW2038016401

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.