Evidence map›Paper›PMID 22216014›Full record

ArticlePLoS genetics2011

Azospirillum genomes reveal transition of bacteria from aquatic to terrestrial environments.

Florence Wisniewski-Dyé, Kirill Borziak, Gurusahai Khalsa-Moyers, Gladys Alexandre, Leonid O Sukharnikov, Kristin Wuichet, Gregory B Hurst, W Hayes McDonald, Jon S Robertson, Valérie Barbe and 16 more

Abstract read
In one paragraph

Article in PLoS genetics, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 78 papers.

0numbers the graph read from it
0cells of the map it votes in
78citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

78 citing papers in PubMed.

  1. Article
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  3. Review
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  6. AnApplied and environmental microbiology · 2024
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  14. Review
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  16. Article
  17. Importance ofPathogens (Basel, Switzerland) · 2021
    Article
  18. Review
  19. Article
  20. ThemSystems · 2021
    Article

18 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

26 authors.

Florence Wisniewski-DyéCNRS, UMR 5557, Ecologie Microbienne, Université de Lyon, Villeurbanne, France.
Kirill Borziak
Gurusahai Khalsa-Moyers
Gladys Alexandre
Leonid O Sukharnikov
Kristin Wuichet
Gregory B Hurst
W Hayes McDonald
Jon S Robertson
Valérie Barbe
Alexandra Calteau
Zoé Rouy
Sophie Mangenot
Claire Prigent-Combaret
Philippe Normand
Mickaël Boyer
Patricia Siguier
Yves Dessaux
Claudine Elmerich
Guy Condemine
Ganisan Krishnen
Ivan Kennedy
Andrew H Paterson
Victor González
Patrick Mavingui
Igor B Zhulin

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Fossil records indicate that life appeared in marine environments ∼3.5 billion years ago (Gyr) and transitioned to terrestrial ecosystems nearly 2.5 Gyr. Sequence analysis suggests that "hydrobacteria" and "terrabacteria" might have diverged as early as 3 Gyr. Bacteria of the genus Azospirillum are associated with roots of terrestrial plants; however, virtually all their close relatives are aquatic. We obtained genome sequences of two Azospirillum species and analyzed their gene origins. While most Azospirillum house-keeping genes have orthologs in its close aquatic relatives, this lineage has obtained nearly half of its genome from terrestrial organisms. The majority of genes encoding functions critical for association with plants are among horizontally transferred genes. Our results show that transition of some aquatic bacteria to terrestrial habitats occurred much later than the suggested initial divergence of hydro- and terrabacterial clades. The birth of the genus Azospirillum approximately coincided with the emergence of vascular plants on land.

Indexed as

Biological EvolutionEcosystemAquatic OrganismsAzospirillumBase SequenceGenes, EssentialGene Transfer, HorizontalGenome, BacterialGlycoside HydrolasesPhylogenyPlant RootsRhodospirillaceaeRNA, Ribosomal, 16SGlycoside HydrolasesRNA, Ribosomal, 16S

Identifiers

PMID22216014
PMCPMC3245306

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.