ArticleGenetics and molecular biology2011
Genome-wide identification and phylogenetic analysis of the ERF gene family in cucumbers.
Article in Genetics and molecular biology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 76 papers.
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Who cites it
76 citing papers in PubMed, 159 citations in OpenAlex.
- TaWRKY33 Positively Regulates TaERF1-A, Thereby Activating TaP5CSPlant, cell & environment · 2026Article
- Genome-wide analysis of AP2/ERF genes in sweet cherry and functional characteristic of PavERF45 in response to cold stress.BMC plant biology · 2026Article
- Comprehensive characterization of the genes in AP2/ERF family and their involvement in salt-alkali stress response duringFrontiers in plant science · 2026Article
- Identification of ERF genes and characterization of ClERF054 under cold and salt stresses in Citrullus lanatus.BMC plant biology · 2025Article
- Evolutionary and functional diversification of the DOG gene family in wheat (Triticum aestivum L.) and their roles in seed dormancy.BMC genomics · 2025Article
- Genome-wide analysis of the AP2/ERF transcription factor superfamily in perennial ryegrass.BMC genomics · 2025Article
- Isolation of the AP2/ERF transcription factor CaERF14 in pepper and functional characterization under salinity and dehydration stress.Scientific reports · 2025Article
- Genome-wide characterization and expression profiling of FIMBRIN gene family members in response to abiotic stress in Medicago sativa.BMC plant biology · 2025Article
- Plant Signaling Hormones and Transcription Factors: Key Regulators of Plant Responses to Growth, Development, and Stress.Plants (Basel, Switzerland) · 2025Review
- Genome-wide identification of NDR1/HIN1-like genes in kiwifruit and function analysis of AeNHL17 in response to disease resistance.BMC plant biology · 2024Article
- Revisit and explore the ethylene-independent mechanism of sex expression in cucumber (Cucumis sativus).Plant reproduction · 2024Review
- Analysis of the Aging-Related AP2/ERF Transcription Factor Gene Family inInternational journal of molecular sciences · 2024Article
- Genome-Wide Identification of Bilberry WRKY Transcription Factors: Go Wild and Duplicate.Plants (Basel, Switzerland) · 2023Article
- Transcript-wide identification and expression pattern analysis to comprehend the roles of AP2/ERF genes under development and abiotic stress in Trichosanthes kirilowii.BMC plant biology · 2023Article
- Molecular Evolution and Genetic Variation ofGenes · 2023Article
- Article
- Genome-Wide Identification and Characterization of the GRF Gene Family inInternational journal of molecular sciences · 2023Article
- Bioinformatic analysis of wheat defensin gene family and function verification of candidate genes.Frontiers in plant science · 2023Article
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- Genome-Wide Analysis of the AlmondBiology · 2022Article
16 more citing papers are in PubMed but not listed here.
Corrections and comments
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Authors and funding
2 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Members of the ERF transcription-factor family participate in a number of biological processes, viz., responses to hormones, adaptation to biotic and abiotic stress, metabolism regulation, beneficial symbiotic interactions, cell differentiation and developmental processes. So far, no tissue-expression profile of any cucumber ERF protein has been reported in detail. Recent completion of the cucumber full-genome sequence has come to facilitate, not only genome-wide analysis of ERF family members in cucumbers themselves, but also a comparative analysis with those in Arabidopsis and rice. In this study, 103 hypothetical ERF family genes in the cucumber genome were identified, phylogenetic analysis indicating their classification into 10 groups, designated I to X. Motif analysis further indicated that most of the conserved motifs outside the AP2/ERF domain, are selectively distributed among the specific clades in the phylogenetic tree. From chromosomal localization and genome distribution analysis, it appears that tandem-duplication may have contributed to CsERF gene expansion. Intron/exon structure analysis indicated that a few CsERFs still conserved the former intron-position patterns existent in the common ancestor of monocots and eudicots. Expression analysis revealed the widespread distribution of the cucumber ERF gene family within plant tissues, thereby implying the probability of their performing various roles therein. Furthermore, members of some groups presented mutually similar expression patterns that might be related to their phylogenetic groups.
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