Evidence map›Paper›PMID 22215733›Full record

ArticleScience signaling2012

Incoherent feedforward control governs adaptation of activated ras in a eukaryotic chemotaxis pathway.

Kosuke Takeda, Danying Shao, Micha Adler, Pascale G Charest, William F Loomis, Herbert Levine, Alex Groisman, Wouter-Jan Rappel, Richard A Firtel

Open access · greenAbstract read
In one paragraph

Article in Science signaling, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 95 papers.

0numbers the graph read from it
0cells of the map it votes in
95citing papers in PubMed
7.8field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

95 citing papers in PubMed, 166 citations in OpenAlex.

  1. Many Cells Make Light Work: Self-Generated Gradients OrganizeCold Spring Harbor perspectives in biology · 2026
    Review
  2. Article
  3. Emergent eukaryotic directional sensing via receptor degradation and diffusion.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  4. Article
  5. Article
  6. Review
  7. Spontaneous signal generation by an excitable system for cell migration.Frontiers in cell and developmental biology · 2024
    Review
  8. Article
  9. Article
  10. Dynamics and Sensitivity of Signaling Pathways.Current pathobiology reports · 2022
    Article
  11. Article
  12. Article
  13. Review
  14. Microtopographical guidance of macropinocytic signaling patches.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  15. Ras inhibitor CAPRI enables neutrophil-like cells to chemotax through a higher-concentration range of gradients.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  16. Article
  17. Review
  18. Using Live-Cell Imaging and Synthetic Biology to Probe Directed Migration inFrontiers in cell and developmental biology · 2021
    Review
  19. Review
  20. Article

35 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Kosuke TakedaSection of Cell and Developmental Biology, Division of Biological Sciences, University of California, San Diego, La Jolla, CA 92093, USA.
Danying Shao
Micha Adler
Pascale G Charest
William F Loomis
Herbert Levine
Alex Groisman
Wouter-Jan Rappel
Richard A Firtel
University of California, San Diego · USCenter for Theoretical Biological Physics · US

Funding

Project 5P01GM078586 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI RAPPEL, WOUTER-JAN · 2007 to 2016
$11.2M
SIGNALLING PROCESSES IN DICTYOSTELIUMR01GM037830 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI FIRTEL, RICHARD A · 1986 to 2015
$8.5M
GENE STRUCTURE TRANSCRIPTIONAL REGULATIONR01GM024279 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI FIRTEL, RICHARD A · 1985 to 2007
$3.4M
Quantitative Analysis of Chemotactic Motility Cycle of Ameboid CellsR01GM084227 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI DEL ALAMO, JUAN CARLOS, FIRTEL, RICHARD A · 2010 to 2018
$2.7M
NIGMS NIH HHS P01 GM078586NIGMS NIH HHS R01 GM024279NIGMS NIH HHS R01 GM037830NIGMS NIH HHS R01 GM084227
6 · The paper itself

Abstract

Adaptation in signaling systems, during which the output returns to a fixed baseline after a change in the input, often involves negative feedback loops and plays a crucial role in eukaryotic chemotaxis. We determined the dynamical response to a uniform change in chemoattractant concentration of a eukaryotic chemotaxis pathway immediately downstream from G protein-coupled receptors. The response of an activated Ras showed near-perfect adaptation, leading us to attempt to fit the results using mathematical models for the two possible simple network topologies that can provide perfect adaptation. Only the incoherent feedforward network accurately described the experimental results. This analysis revealed that adaptation in this Ras pathway is achieved through the proportional activation of upstream components and not through negative feedback loops. Furthermore, these results are consistent with a local excitation, global inhibition mechanism for gradient sensing, possibly with a Ras guanosine triphosphatase-activating protein acting as a global inhibitor.

Indexed as

Models, BiologicalAdaptation, PhysiologicalChemotactic FactorsChemotaxisCyclic AMPDictyosteliumFeedback, PhysiologicalGreen Fluorescent ProteinsMicroscopy, Fluorescenceras ProteinsReceptors, G-Protein-CoupledChemotactic FactorsCyclic AMPGreen Fluorescent Proteinsras ProteinsReceptors, G-Protein-Coupled

Identifiers

PMID22215733
PMCPMC3928814
OpenAlexW2157737080

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.