Evidence map›Paper›PMID 22215637›Full record

ArticleMolecular & cellular proteomics : MCP2012

Quantitative proteomics reveals dynamic changes in the plasma membrane during Arabidopsis immune signaling.

James Mitch Elmore, Jun Liu, Barrett Smith, Brett Phinney, Gitta Coaker

Open access · hybridAbstract read
In one paragraph

Article in Molecular & cellular proteomics : MCP, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 52 papers.

0numbers the graph read from it
0cells of the map it votes in
52citing papers in PubMed
14.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

52 citing papers in PubMed, 105 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. PlantHorticulture research · 2023
    Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Tandem Protein Kinases Emerge as New Regulators of Plant Immunity.Molecular plant-microbe interactions : MPMI · 2021
    Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Chloroplast Calcium Signaling in the Spotlight.Frontiers in plant science · 2020
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

James Mitch ElmoreUniversity of California at Davis, Davis, California 95616, USA.
Jun Liu
Barrett Smith
Brett Phinney
Gitta Coaker
University of California, Davis · USPlant (United States) · US

Funding

Elucidating RIN4_Mediated Immune Signaling Cascades in ArabidopsisR01GM092772 · NIGMS · UNIVERSITY OF CALIFORNIA AT DAVIS · PI COAKER, GITTA LAUREL · 2010 to 2018
$2.8M
NIGMS NIH HHS R01 GM092772NIGMS NIH HHS R01GM092772
6 · The paper itself

Abstract

The plant plasma membrane is a crucial mediator of the interaction between plants and microbes. Understanding how the plasma membrane proteome responds to diverse immune signaling events will lead to a greater understanding of plant immunity and uncover novel targets for crop improvement. Here we report the results from a large scale quantitative proteomics study of plasma membrane-enriched fractions upon activation of the Arabidopsis thaliana immune receptor RPS2. More than 2300 proteins were identified in total, with 1353 proteins reproducibly identified across multiple replications. Label-free spectral counting was employed to quantify the relative protein abundance between different treatment samples. Over 20% of up-regulated proteins have known roles in plant immune responses. Significantly changing proteins include those involved in calcium and lipid signaling, membrane transport, primary and secondary metabolism, protein phosphorylation, redox homeostasis, and vesicle trafficking. A subset of differentially regulated proteins was independently validated during bacterial infection. This study presents the largest quantitative proteomics data set of plant immunity to date and provides a framework for understanding global plasma membrane proteome dynamics during plant immune responses.

Indexed as

ArabidopsisArabidopsis ProteinsCell MembraneChromatography, LiquidDexamethasonePlants, Genetically ModifiedProteomicsPseudomonas InfectionsTandem Mass SpectrometryArabidopsis ProteinsDexamethasoneRPS2 protein, Arabidopsis

Identifiers

PMID22215637
PMCPMC3322570
OpenAlexW2089130422

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.