Evidence map›Paper›PMID 22215588›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2012

Bivalent recognition of nucleosomes by the tandem PHD fingers of the CHD4 ATPase is required for CHD4-mediated repression.

Catherine A Musselman, Julita Ramírez, Jennifer K Sims, Robyn E Mansfield, Samuel S Oliver, John M Denu, Joel P Mackay, Paul A Wade, James Hagman, Tatiana G Kutateladze

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 77 papers.

0numbers the graph read from it
0cells of the map it votes in
77citing papers in PubMed
7.5field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

77 citing papers in PubMed, 118 citations in OpenAlex.

  1. Molecular Acrobats: How CHD Remodelers Shape the Genetic Playground to License Cell Identity.BioEssays : news and reviews in molecular, cellular and developmental biology · 2026
    Review
  2. Review
  3. Article
  4. Article
  5. Article
  6. Human mutation · 2026
    Review
  7. Article
  8. Article
  9. Review
  10. Article
  11. How does CHD4 slide nucleosomes?Biochemical Society transactions · 2024
    Review
  12. Article
  13. Review
  14. Article
  15. Article
  16. Review
  17. Review
  18. Conformational Dynamics of Histone H3 Tails in Chromatin.The journal of physical chemistry letters · 2021
    Article
  19. Article
  20. Chromatin Remodeling in the Brain-aInternational journal of molecular sciences · 2021
    Review

17 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Catherine A MusselmanDepartment of Pharmacology, University of Colorado Denver School of Medicine, Aurora, CO 80045, USA.
Julita Ramírez
Jennifer K Sims
Robyn E Mansfield
Samuel S Oliver
John M Denu
Joel P Mackay
Paul A Wade
James Hagman
Tatiana G Kutateladze
University of Colorado Denver · USNational Institute of Environmental Health Sciences · USUniversity of Sydney · AUUniversity of Wisconsin–Madison · US

Funding

University of Colorado Cancer Center Support Grant - Lung Cancer Patient-Derived Xenografts with Autologous Human Immune SystemsP30CA046934 · NCI · UNIVERSITY OF COLORADO DENVER · PI James V Degregori · 1988 to 2026
$117.0M
Eukaryotic Transcriptional RegulationZIAES101965 · NIEHS · NATIONAL INSTITUTE OF ENVIRONMENTAL HEALTH SCIENCES · PI WADE, PAUL A · 2009 to 2025
$40.9M
TRAINING PROGRAM IN IMMUNOLOGYT32AI007405 · NIAID · UNIVERSITY OF COLORADO DENVER · PI Laurel L Lenz, Raul Martin Torres · 1991 to 2026
$10.5M
Molecular mechanisms of histone modification - Alzheimer’s supplement NOT-AG-18-008R37GM059785 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI DENU, JOHN M · 2013 to 2022
$3.7M
Function and Regulation of Early B Cell Factor (EBF)R01AI054661 · NIAID · NATIONAL JEWISH HEALTH · PI HAGMAN, JAMES R. · 2004 to 2011
$2.9M
Regulation of B Cell Identity and Lineage ProgressionR01AI081878 · NIAID · NATIONAL JEWISH HEALTH · PI HAGMAN, JAMES R. · 2010 to 2014
$1.9M
Molecular analysis of CHD4R01GM096863 · NIGMS · UNIVERSITY OF COLORADO DENVER · PI KUTATELADZE, TATIANA G · 2011 to 2014
$1.4M
BioinformaticsZ01ES101765 · NIEHS · NATIONAL INSTITUTE OF ENVIRONMENTAL HEALTH SCIENCES · PI LI, LEPING · 2004 to 2008
$1.1M
Structural basis of signaling by ING2 PHDR01CA113472 · NCI · UNIVERSITY OF COLORADO DENVER · PI KUTATELADZE, TATIANA G · 2006 to 2010
$987k
Structural insight into the role of CHD4 PHD fingers.F32HL096399 · NHLBI · UNIVERSITY OF COLORADO DENVER · PI MUSSELMAN, CATHERINE ANNE · 2009 to 2011
$157k
Intramural NIH HHS Z01 ES101765NCI NIH HHS CA113472NCI NIH HHS P30 CA046934NCI NIH HHS R01 CA113472NHLBI NIH HHS F32 HL096399NHLBI NIH HHS F32HL096399NIAID NIH HHS AI081878NIAID NIH HHS R01 AI054661NIAID NIH HHS R01 AI081878NIAID NIH HHS T32 AI007405NIAID NIH HHS T32 AI07405NIGMS NIH HHS GM096863NIGMS NIH HHS R01 GM096863NIGMS NIH HHS R37 GM059785
6 · The paper itself

Abstract

CHD4 is a catalytic subunit of the NuRD (nucleosome remodeling and deacetylase) complex essential in transcriptional regulation, chromatin assembly and DNA damage repair. CHD4 contains tandem plant homeodomain (PHD) fingers connected by a short linker, the biological function of which remains unclear. Here we explore the combinatorial action of the CHD4 PHD1/2 fingers and detail the molecular basis for their association with chromatin. We found that PHD1/2 targets nucleosomes in a multivalent manner, concomitantly engaging two histone H3 tails. This robust synergistic interaction displaces HP1γ from pericentric sites, inducing changes in chromatin structure and leading to the dispersion of the heterochromatic mark H3K9me3. We demonstrate that recognition of the histone H3 tails by the PHD fingers is required for repressive activity of the CHD4/NuRD complex. Together, our data elucidate the molecular mechanism of multivalent association of the PHD fingers with chromatin and reveal their critical role in the regulation of CHD4 functions.

Indexed as

Amino Acid SequenceHEK293 CellsHeterochromatinHistonesHomeodomain ProteinsHumansMi-2 Nucleosome Remodeling and Deacetylase ComplexModels, MolecularMolecular Sequence DataNucleosomesProtein Processing, Post-TranslationalProtein Structure, TertiaryRepressor ProteinsTranscription, GeneticHeterochromatinHistonesHomeodomain ProteinsMi-2 Nucleosome Remodeling and Deacetylase ComplexNucleosomesRepressor Proteins

Identifiers

PMID22215588
PMCPMC3271909
OpenAlexW2110628394

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.