Evidence map›Paper›PMID 22214845›Full record

ArticleThe Journal of clinical investigation2012

Cross-presentation and genome-wide screening reveal candidate T cells antigens for a herpes simplex virus type 1 vaccine.

Lichen Jing, Jürgen Haas, Tiana M Chong, Joseph J Bruckner, Greg C Dann, Lichun Dong, Joshua O Marshak, Christopher L McClurkan, Tori N Yamamoto, Susanne M Bailer and 4 more

Erratum issuedOpen access · greenAbstract read
In one paragraph

Article in The Journal of clinical investigation, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 73 papers.

0numbers the graph read from it
0cells of the map it votes in
73citing papers in PubMed
6.6field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

73 citing papers in PubMed, 107 citations in OpenAlex.

  1. Review
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  19. CD8Research square · 2022
    Article
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13 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

14 authors at 3 institutions in 3 countries.

Lichen JingDepartment of Medicine, University of Washington, Seattle, Washington, USA.
Jürgen Haas
Tiana M Chong
Joseph J Bruckner
Greg C Dann
Lichun Dong
Joshua O Marshak
Christopher L McClurkan
Tori N Yamamoto
Susanne M Bailer
Kerry J Laing
Anna Wald
Georges M G M Verjans
David M Koelle
University of Washington · USCape Town HVTN Immunology Laboratory / Hutchinson Centre Research Institute of South Africa · ZAErasmus University Rotterdam · NL

Funding

Translational Bioimaging Core Shared ResourceP30CA015704 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI Marian Esvelt · 1985 to 2026
$296.4M
University of Washington/Fred Hutch Center for AIDS ResearchP30AI027757 · NIAID · UNIVERSITY OF WASHINGTON · PI Kenneth Sherr · 1988 to 2026
$104.9M
THE PERINATAL COMPLICATIONS OF ASYMPTOMATIC GENITAL HERPES SIMPLEX VIRUSP01AI030731 · NIAID · UNIVERSITY OF WASHINGTON · PI ZHU, JIA · 1991 to 2017
$34.3M
Cytotoxic T-Cell Responses to HSV: HIV-Infected PersonsR37AI042528 · NIAID · FRED HUTCHINSON CANCER RESEARCH CENTER · PI COREY, LAWRENCE · 2002 to 2011
$3.5M
CYTOTOXIC T CELL RESPONSES TO HSV IN HIV INFECTIONR01AI042528 · NIAID · FRED HUTCHINSON CANCER RESEARCH CENTER · PI COREY, LAWRENCE, ZHU, JIA · 1998 to 2016
$2.7M
Genomic systems approach to measure HSV-1-specific T-cell dominance in humansR01AI094019 · NIAID · UNIVERSITY OF WASHINGTON · PI KOELLE, DAVID M · 2012 to 2016
$1.9M
HSV-1-specific T-cell responses in human sensory gangliaR21AI081060 · NIAID · UNIVERSITY OF WASHINGTON · PI KOELLE, DAVID M · 2009 to 2010
$333k
Medical Research Council G0501453NCI NIH HHS P30 CA015704NIAID NIH HHS AI042528NIAID NIH HHS AI081060NIAID NIH HHS AI094019NIAID NIH HHS AI30731NIAID NIH HHS P01 AI030731NIAID NIH HHS P30 AI027757NIAID NIH HHS R01 AI042528NIAID NIH HHS R01 AI094019NIAID NIH HHS R21 AI081060NIAID NIH HHS R37 AI042528
6 · The paper itself

Abstract

Herpes simplex virus type 1 (HSV-1) not only causes painful recurrent oral-labial infections, it can also cause permanent brain damage and blindness. There is currently no HSV-1 vaccine. An effective vaccine must stimulate coordinated T cell responses, but the large size of the genome and the low frequency of HSV-1-specific T cells have hampered the search for the most effective T cell antigens for inclusion in a candidate vaccine. We have now developed what we believe to be novel methods to efficiently generate a genome-wide map of the responsiveness of HSV-1-specific T cells, and demonstrate the applicability of these methods to a second complex microbe, vaccinia virus. We used cross-presentation and CD137 activation-based FACS to enrich for polyclonal CD8+ T effector T cells. The HSV-1 proteome was prepared in a flexible format for analyzing both CD8+ and CD4+ T cells from study participants. Scans with participant-specific panels of artificial APCs identified an oligospecific response in each individual. Parallel CD137-based CD4+ T cell research showed discrete oligospecific recognition of HSV-1 antigens. Unexpectedly, the two HSV-1 proteins not previously considered as vaccine candidates elicited both CD8+ and CD4+ T cell responses in most HSV-1-infected individuals. In this era of microbial genomics, our methods - also demonstrated in principle for vaccinia virus for both CD8+ and CD4+ T cells - should be broadly applicable to the selection of T cell antigens for inclusion in candidate vaccines for many pathogens.

Indexed as

AdultAntigens, ViralCD4-Positive T-LymphocytesCD8-Positive T-LymphocytesCells, CulturedCross-PrimingCytotoxicity, ImmunologicFemaleHerpes SimplexHerpesvirus 1, HumanHLA AntigensHumansInterferon-gammaMaleMiddle AgedTumor Necrosis Factor Receptor Superfamily, Member 9Antigens, ViralHLA AntigensInterferon-gammaTumor Necrosis Factor Receptor Superfamily, Member 9Viral Vaccines

Identifiers

PMID22214845
PMCPMC3266794
OpenAlexW2095899901

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.