Evidence map›Paper›PMID 22214232›Full record

ArticleRetrovirology2012

The role of G protein gene GNB3 C825T polymorphism in HIV-1 acquisition, progression and immune activation.

Jennifer Juno, Jeffrey Tuff, Robert Choi, Catherine Card, Joshua Kimani, Charles Wachihi, Sandra Koesters-Kiazyk, T Blake Ball, Carey Farquhar, Francis A Plummer and 3 more

Open access · goldAbstract read
In one paragraph

Article in Retrovirology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed, 1 pooled it
0.8field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 1 synthesis or guideline pooled it, 35 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Association ofFrontiers in genetics · 2022
    Article
  4. Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 3 countries.

Jennifer JunoDepartment of Medical Microbiology, University of Manitoba, Winnipeg, Canada.
Jeffrey Tuff
Robert Choi
Catherine Card
Joshua Kimani
Charles Wachihi
Sandra Koesters-Kiazyk
T Blake Ball
Carey Farquhar
Francis A Plummer
Grace John-Stewart
Ma Luo
Keith R Fowke
University of Manitoba · CAPublic Health Agency of Canada · CASeattle University · USKenya AIDS Vaccine Initiative · KEUniversity of Washington · US

Funding

University of Washington/Fred Hutch Center for AIDS ResearchP30AI027757 · NIAID · UNIVERSITY OF WASHINGTON · PI EDWIN ROBERTO ORELLANA · 1988 to 2026
$104.9M
Urgent Versus Post-Stabilization ART in HIV+ Children with Severe Co-infectionsR01HD023412 · NICHD · UNIVERSITY OF WASHINGTON · PI Grace C. John-Stewart, DALTON CHEKOKO WAMALWA · 1987 to 2026
$12.2M
The role of HIV-1 neutralizing mucosal IgA and lgG and genital shedding of HIV-1K01TW008406 · FIC · UNIVERSITY OF WASHINGTON · PI CHOI, ROBERT · 2010 to 2012
$366k
CIHR MOP-81377FIC NIH HHS K01 TW008406NIAID NIH HHS P30 AI027757NICHD NIH HHS HD-23412
6 · The paper itself

Abstract

backgroundThe GNB3 C825T polymorphism is associated with increased G protein-mediated signal transduction, SDF-1α-mediated lymphocyte chemotaxis, accelerated HIV-1 progression, and altered responses to antiretroviral therapy among Caucasian subjects. The GNB3 825T allele is highly prevalent in African populations, and as such any impact on HIV-1 acquisition or progression rates could have a dramatic impact. This study examines the association of the 825T polymorphism with HIV-1 acquisition, disease progression and immune activation in two African cohorts. GNB3 825 genotyping was performed for enrolees in both a commercial sex worker cohort and a perinatal HIV transmission (PHT) cohort in Nairobi, Kenya. Ex vivo immune activation was quantified by flow cytometry, and plasma chemokine levels were assessed by cytokine bead array.

resultsGNB3 genotype was not associated with sexual or vertical HIV-1 acquisition within these cohorts. Within the Pumwani cohort, GNB3 genotype did not affect HIV-1 disease progression among seroconverters or among HIV-1-positive individuals after adjustment for baseline CD4 count. Maternal CD4 decline and viral load increase in the PHT cohort did not differ between genotypes. Multi-parametric flow cytometry assessment of T cell activation (CD69, HLA-DR, CD38) and Treg frequency (CD25(+)FOXP3(+)) found no differences between genotype groups. Plasma SDF-1α, MIP-1β and TRAIL levels quantified by cytokine bead array were also similar between groups.

conclusionsIn contrast to previous reports, we were unable to provide evidence to suggest that the GNB3 C825T polymorphism affects HIV-1 acquisition or disease progression within African populations. Ex vivo immune activation and plasma chemokine levels were similarly unaffected by GNB3 genotype in both HIV-1-negative and HIV-1-positive individuals. The paucity of studies investigating the impact of GNB3 polymorphism among African populations and the lack of mechanistic studies make it difficult to assess the true biological significance of this polymorphism in HIV-1 infection.

Indexed as

Genetic Predisposition to DiseasePolymorphism, GeneticCohort StudiesCytokinesDisease ProgressionFemaleHeterotrimeric GTP-Binding ProteinsHIV-1HIV InfectionsHumansInfantInfant, NewbornKenyaPregnancyCytokinesG-protein beta3 subunitHeterotrimeric GTP-Binding Proteins

Identifiers

PMID22214232
PMCPMC3278356
OpenAlexW2121098529

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.