Evidence map›Paper›PMID 22210890›Full record

ArticleNucleic acids research2012

Transcription activation by the siderophore sensor Btr is mediated by ligand-dependent stimulation of promoter clearance.

Ahmed Gaballa, Shawn MacLellan, John D Helmann

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.2field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 19 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Redox Sensing by FeAntioxidants & redox signaling · 2018
    Review
  6. Article
  7. Article
  8. Metal homeostasis and resistance in bacteria.Nature reviews. Microbiology · 2017
    Review
  9. Article
  10. Article
  11. Article
  12. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Ahmed GaballaDepartment of Microbiology, Cornell University, Ithaca, NY 14853-8101, USA.
Shawn MacLellan
John D Helmann
Cornell University · US

Funding

Zinc Homeostasis in Bacillus subtilisR01GM059323 · NIGMS · CORNELL UNIVERSITY ITHACA · PI HELMANN, JOHN D · 2000 to 2017
$4.5M
NIGMS NIH HHS GM-059323
6 · The paper itself

Abstract

Bacterial transcription factors often function as DNA-binding proteins that selectively activate or repress promoters, although the biochemical mechanisms vary. In most well-understood examples, activators function by either increasing the affinity of RNA polymerase (RNAP) for the target promoter, or by increasing the isomerization of the initial closed complex to the open complex. We report that Bacillus subtilis Btr, a member of the AraC family of activators, functions principally as a ligand-dependent activator of promoter clearance. In the presence of its co-activator, the siderophore bacillibactin (BB), the Btr:BB complex enhances productive transcription, while having only modest effects on either RNAP promoter association or the production of abortive transcripts. Btr binds to two direct repeat sequences adjacent to the -35 region; recognition of the downstream motif is most important for establishing a productive interaction between the Btr:BB complex and RNAP. The resulting Btr:BB dependent increase in transcription enables the production of the ferric-BB importer to be activated by the presence of its cognate substrate.

Indexed as

Gene Expression Regulation, BacterialPromoter Regions, GeneticTranscriptional ActivationAraC Transcription FactorBacillus subtilisBacterial ProteinsBinding SitesDNA-Binding ProteinsDNA-Directed RNA PolymerasesLigandsModels, GeneticMutationRepetitive Sequences, Nucleic AcidRNASiderophoresAraC Transcription FactorBacterial ProteinsDNA-Binding ProteinsDNA-Directed RNA PolymerasesLigandsRNASiderophores

Identifiers

PMID22210890
PMCPMC3333878
OpenAlexW2118229529

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.