Evidence map›Paper›PMID 22210882›Full record

ArticleNucleic acids research2012

MRE11 and RAD50, but not NBS1, are essential for gene targeting in the moss Physcomitrella patens.

Yasuko Kamisugi, Didier G Schaefer, Jaroslav Kozak, Florence Charlot, Nathalie Vrielynck, Marcela Holá, Karel J Angelis, Andrew C Cuming, Fabien Nogué

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 47 citations in OpenAlex.

  1. Plant tolerance mechanisms to DNA-damaging UV stress.Journal of experimental botany · 2025
    Review
  2. Article
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  6. Stable Protein Sialylation in Physcomitrella.Frontiers in plant science · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 4 countries.

Yasuko KamisugiCentre for Plant Sciences, Faculty of Biological Sciences, Leeds University, Leeds LS2 9JT, UK.
Didier G Schaefer
Jaroslav Kozak
Florence Charlot
Nathalie Vrielynck
Marcela Holá
Karel J Angelis
Andrew C Cuming
Fabien Nogué
University of Leeds · GBCzech Academy of Sciences, Institute of Experimental Botany · CZInstitut Jean-Pierre Bourgin · FR

Funding

Biotechnology and Biological Sciences Research Council BB/I006710/1
6 · The paper itself

Abstract

The moss Physcomitrella patens is unique among plant models for the high frequency with which targeted transgene insertion occurs via homologous recombination. Transgene integration is believed to utilize existing machinery for the detection and repair of DNA double-strand breaks (DSBs). We undertook targeted knockout of the Physcomitrella genes encoding components of the principal sensor of DNA DSBs, the MRN complex. Loss of function of PpMRE11 or PpRAD50 strongly and specifically inhibited gene targeting, whilst rates of untargeted transgene integration were relatively unaffected. In contrast, disruption of the PpNBS1 gene retained the wild-type capacity to integrate transforming DNA efficiently at homologous loci. Analysis of the kinetics of DNA-DSB repair in wild-type and mutant plants by single-nucleus agarose gel electrophoresis revealed that bleomycin-induced fragmentation of genomic DNA was repaired at approximately equal rates in each genotype, although both the Ppmre11 and Pprad50 mutants exhibited severely restricted growth and development and enhanced sensitivity to UV-B and bleomycin-induced DNA damage, compared with wild-type and Ppnbs1 plants. This implies that while extensive DNA repair can occur in the absence of a functional MRN complex; this is unsupervised in nature and results in the accumulation of deleterious mutations incompatible with normal growth and development.

Indexed as

DNA Breaks, Double-StrandedDNA RepairGene TargetingBryopsidaDNA-Binding ProteinsGene ExpressionGene Knockout TechniquesMolecular Sequence DataMutationPhenotypePlant ProteinsDNA-Binding ProteinsPlant Proteins

Identifiers

PMID22210882
PMCPMC3333855
OpenAlexW2133012963

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.