Evidence map›Paper›PMID 22210761›Full record

ArticleJournal of bacteriology2012

Analysis of the Pseudomonas aeruginosa regulon controlled by the sensor kinase KinB and sigma factor RpoN.

F Heath Damron, Joshua P Owings, Yuta Okkotsu, John J Varga, Jill R Schurr, Joanna B Goldberg, Michael J Schurr, Hongwei D Yu

Open access · bronzeAbstract read
In one paragraph

Article in Journal of bacteriology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 59 papers.

0numbers the graph read from it
0cells of the map it votes in
59citing papers in PubMed
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

59 citing papers in PubMed, 87 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Review
  6. Article
  7. Advances in alginate biosynthesis: regulation and production inFrontiers in bioengineering and biotechnology · 2025
    Review
  8. Article
  9. Transcriptional Regulators Controlling Virulence inInternational journal of molecular sciences · 2023
    Review
  10. Review
  11. Mechanisms regulating the CRISPR-Cas systems.Frontiers in microbiology · 2023
    Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

F Heath DamronDepartment of Biochemistry and Microbiology, Joan C. Edwards School of Medicine, Marshall University, Huntington, West Virginia, USA.
Joshua P Owings
Yuta Okkotsu
John J Varga
Jill R Schurr
Joanna B Goldberg
Michael J Schurr
Hongwei D Yu
University of Virginia · USMarshall University · USUniversity of Colorado Anschutz Medical Campus · USUniversity of Colorado Denver · US

Funding

WVU &MU NEW FACULTY GRANTSP20RR016477 · NCRR · MARSHALL UNIVERSITY · PI RANKIN, GARY O · 2001 to 2011
$35.5M
INFECTIOUS DISEASES TRAINING PROGRAMT32AI007046 · NIAID · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI Alison K Criss, William A Petri · 1985 to 2026
$15.3M
Global Biothreats Training ProgramT32AI055432 · NIAID · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI CRISS, ALISON K, PETRI, WILLIAM A · 2003 to 2022
$4.0M
Live Attenuated Recombinant Bacterial Delivery of Polysaccharide Vaccine AntigensR01AI068112 · NIAID · UNIVERSITY OF VIRGINIA · PI GOLDBERG, JOANNA B · 2006 to 2010
$2.0M
Regulation of Ps. aeruginosa Virulence Factors by AlgRR01AI050812 · NIAID · UNIVERSITY OF COLORADO DENVER · PI SCHURR, MICHAEL JOHN · 2004 to 2008
$1.3M
NCRR NIH HHS P20 RR016477NIAID NIH HHS 5T32AI055432NIAID NIH HHS AI07406NIAID NIH HHS R01 AI050812NIAID NIH HHS R01 AI050812-01NIAID NIH HHS R01 AI068112NIAID NIH HHS T32 AI007046NIAID NIH HHS T32 AI055432
6 · The paper itself

Abstract

Alginate overproduction by Pseudomonas aeruginosa, also known as mucoidy, is associated with chronic endobronchial infections in cystic fibrosis. Alginate biosynthesis is initiated by the extracytoplasmic function sigma factor (σ(22); AlgU/AlgT). In the wild-type (wt) nonmucoid strains, such as PAO1, AlgU is sequestered to the cytoplasmic membrane by the anti-sigma factor MucA that inhibits alginate production. One mechanism underlying the conversion to mucoidy is mutation of mucA. However, the mucoid conversion can occur in wt mucA strains via the degradation of MucA by activated intramembrane proteases AlgW and/or MucP. Previously, we reported that the deletion of the sensor kinase KinB in PAO1 induces an AlgW-dependent proteolysis of MucA, resulting in alginate overproduction. This type of mucoid induction requires the alternate sigma factor RpoN (σ(54)). To determine the RpoN-dependent KinB regulon, microarray and proteomic analyses were performed on a mucoid kinB mutant and an isogenic nonmucoid kinB rpoN double mutant. In the kinB mutant of PAO1, RpoN controlled the expression of approximately 20% of the genome. In addition to alginate biosynthetic and regulatory genes, KinB and RpoN also control a large number of genes including those involved in carbohydrate metabolism, quorum sensing, iron regulation, rhamnolipid production, and motility. In an acute pneumonia murine infection model, BALB/c mice exhibited increased survival when challenged with the kinB mutant relative to survival with PAO1 challenge. Together, these data strongly suggest that KinB regulates virulence factors important for the development of acute pneumonia and conversion to mucoidy.

Indexed as

Gene Expression Regulation, BacterialRegulonAnimalsDisease Models, AnimalGene DeletionGene Expression ProfilingHistidine KinaseMiceMice, Inbred BALB CMicroarray AnalysisPneumonia, BacterialProtein KinasesProteomePseudomonas aeruginosaPseudomonas InfectionsRNA Polymerase Sigma 54Histidine KinaseProtein KinasesProteomeRNA Polymerase Sigma 54

Identifiers

PMID22210761
PMCPMC3294845
OpenAlexW1963949581

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.