ArticleDNA research : an international journal for rapid publication of reports on genes and genomes2012
Discovery and mapping of a new expressed sequence tag-single nucleotide polymorphism and simple sequence repeat panel for large-scale genetic studies and breeding of Theobroma cacao L.
Article in DNA research : an international journal for rapid publication of reports on genes and genomes, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.
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Who cites it
18 citing papers in PubMed.
- Article
- Assessing genetic redundancy and diversity in Colombian cacao germplasm banks using SNP fingerprinting.Frontiers in plant science · 2025Article
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- Assessing hidden parentage and genetic integrity of the "United Fruit Clones" of cacao (Breeding science · 2018Article
- Whole-Genome Comparison Reveals Heterogeneous Divergence and Mutation Hotspots in Chloroplast Genome of Eucommia ulmoides Oliver.International journal of molecular sciences · 2018Article
- Cacao biotechnology: current status and future prospects.Plant biotechnology journal · 2018Review
- Deciphering the Theobroma cacao self-incompatibility system: from genomics to diagnostic markers for self-compatibility.Journal of experimental botany · 2017Article
- Report on the development of putative functional SSR and SNP markers in passion fruits.BMC research notes · 2017Article
- Colombia a Source of Cacao Genetic Diversity As Revealed by the Population Structure Analysis of Germplasm Bank ofFrontiers in plant science · 2017Article
- Genetic Parameters and the Impact of Off-Types forFrontiers in plant science · 2017Article
- A Larger Chocolate Chip-Development of a 15KFrontiers in plant science · 2017Article
- Article
- A gene-based map of the Nod factor-independent Aeschynomene evenia sheds new light on the evolution of nodulation and legume genomes.DNA research : an international journal for rapid publication of reports on genes and genomes · 2016Article
- Identification of candidate genes involved in Witches' broom disease resistance in a segregating mapping population of Theobroma cacao L. in Brazil.BMC genomics · 2016Article
- Making a chocolate chip: development and evaluation of a 6K SNP array for Theobroma cacao.DNA research : an international journal for rapid publication of reports on genes and genomes · 2015Article
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- Article
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Authors and funding
17 authors.
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Abstract
Theobroma cacao is an economically important tree of several tropical countries. Its genetic improvement is essential to provide protection against major diseases and improve chocolate quality. We discovered and mapped new expressed sequence tag-single nucleotide polymorphism (EST-SNP) and simple sequence repeat (SSR) markers and constructed a high-density genetic map. By screening 149 650 ESTs, 5246 SNPs were detected in silico, of which 1536 corresponded to genes with a putative function, while 851 had a clear polymorphic pattern across a collection of genetic resources. In addition, 409 new SSR markers were detected on the Criollo genome. Lastly, 681 new EST-SNPs and 163 new SSRs were added to the pre-existing 418 co-dominant markers to construct a large consensus genetic map. This high-density map and the set of new genetic markers identified in this study are a milestone in cocoa genomics and for marker-assisted breeding. The data are available at http://tropgenedb.cirad.fr.
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