Evidence map›Paper›PMID 22209762›Full record

ArticleJournal of medical genetics2012

NOTCH2 mutations in Alagille syndrome.

Binita Maya Kamath, Robert C Bauer, Kathleen M Loomes, Grace Chao, Jennifer Gerfen, Anne Hutchinson, Winita Hardikar, Gideon Hirschfield, Paloma Jara, Ian D Krantz and 7 more

Open access · greenAbstract read
In one paragraph

Article in Journal of medical genetics, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 108 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
108citing papers in PubMed, 1 pooled it
10.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

108 citing papers in PubMed, 1 synthesis or guideline pooled it, 215 citations in OpenAlex.

  1. Pooled it
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  8. Phenotypic Divergence of JAG1- and NOTCH2-Associated Alagille Syndrome & Disease-Specific NOTCH2 Variant Classification Guidelines.Liver international : official journal of the International Association for the Study of the Liver · 2025
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  10. Identifying a novelWorld journal of clinical cases · 2025
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  11. The Role of Visual Electrophysiology in Systemic Hereditary Syndromes.International journal of molecular sciences · 2025
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  16. Diseases of bile duct in children.World journal of gastroenterology · 2024
    Review
  17. Review
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48 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 7 institutions in 5 countries.

Binita Maya KamathDivision of Gastroenterology and Nutrition, Department of Pediatrics, The Hospital for Sick Children and University of Toronto, Canada.
Robert C Bauer
Kathleen M Loomes
Grace Chao
Jennifer Gerfen
Anne Hutchinson
Winita Hardikar
Gideon Hirschfield
Paloma Jara
Ian D Krantz
Pablo Lapunzina
Laura Leonard
Simon Ling
Vicky Lee Ng
Phuc Le Hoang
David A Piccoli
Nancy Bettina Spinner
University of Pennsylvania · USChildren's Hospital of Philadelphia · USHospital for Sick Children · CAHospital Universitario La Paz · ESUniversity of Toronto · CAChildren's Hospital 1 · VNRoyal Children's Hospital · AU

Funding

Genetic Modifiers of Liver Disease Severity in Alagille SyndromeR01DK081702 · NIDDK · CHILDREN'S HOSP OF PHILADELPHIA · PI SPINNER, NANCY BETTINA · 2009 to 2013
$3.5M
NIDDK NIH HHS 1R01DK081702NIDDK NIH HHS R01 DK081702
6 · The paper itself

Abstract

backgroundAlagille syndrome (ALGS) is a dominant, multisystem disorder caused by mutations in the Jagged1 (JAG1) ligand in 94% of patients, and in the NOTCH2 receptor in <1%. There are only two NOTCH2 families reported to date. This study hypothesised that additional NOTCH2 mutations would be present in patients with clinical features of ALGS without a JAG1 mutation.

methodsThe study screened a cohort of JAG1-negative individuals with clinical features suggestive or diagnostic of ALGS for NOTCH2 mutations.

resultsEight individuals with novel NOTCH2 mutations (six missense, one splicing, and one non-sense mutation) were identified. Three of these patients met classic criteria for ALGS and five patients only had a subset of features. The mutations were distributed across the extracellular (N=5) and intracellular domains (N=3) of the protein. Functional analysis of four missense, one nonsense, and one splicing mutation demonstrated decreased Notch signalling of these proteins. Subjects with NOTCH2 mutations demonstrated highly variable expressivity of the affected systems, as with JAG1 individuals. Liver involvement was universal in NOTCH2 probands and they had a similar prevalence of ophthalmologic and renal anomalies to JAG1 patients. There was a trend towards less cardiac involvement in the NOTCH2 group (60% vs 100% in JAG1). NOTCH2 (+) probands exhibited a significantly decreased penetrance of vertebral abnormalities (10%) and facial features (20%) when compared to the JAG1 (+) cohort.

conclusionsThis work confirms the importance of NOTCH2 as a second disease gene in ALGS and expands the repertoire of the NOTCH2 related disease phenotype.

Indexed as

MutationAlagille SyndromeAnimalsCell LineDNA Mutational AnalysisFaciesGene ExpressionGenetic Association StudiesHEK293 CellsHumansMicePhenotypeReceptor, Notch2Signal TransductionReceptor, Notch2

Identifiers

PMID22209762
PMCPMC3682659
OpenAlexW2165213798

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.