Evidence map›Paper›PMID 22209328›Full record

ArticleDevelopmental cell2012

DUX4 activates germline genes, retroelements, and immune mediators: implications for facioscapulohumeral dystrophy.

Linda N Geng, Zizhen Yao, Lauren Snider, Abraham P Fong, Jennifer N Cech, Janet M Young, Silvere M van der Maarel, Walter L Ruzzo, Robert C Gentleman, Rabi Tawil and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in Developmental cell, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 324 papers.

0numbers the graph read from it
0cells of the map it votes in
324citing papers in PubMed
9.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

324 citing papers in PubMed, 469 citations in OpenAlex.

  1. Trial
  2. Trial
  3. Article
  4. Review
  5. Review
  6. Review
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Molecular therapy. Nucleic acids · 2026
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. [Clinical characteristics of DUX4-IGH fusion B-cell acute lymphoblastic leukemia in children].Zhongguo dang dai er ke za zhi = Chinese journal of contemporary pediatrics · 2026
    Article
  20. Article

264 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 3 countries.

Linda N GengDivision of Human Biology, Fred Hutchinson Cancer Research Center, Seattle, WA 98109, USA.
Zizhen Yao
Lauren Snider
Abraham P Fong
Jennifer N Cech
Janet M Young
Silvere M van der Maarel
Walter L Ruzzo
Robert C Gentleman
Rabi Tawil
Stephen J Tapscott
Fred Hutch Cancer Center · USCape Town HVTN Immunology Laboratory / Hutchinson Centre Research Institute of South Africa · ZALeiden University Medical Center · NLUniversity of Rochester · USUniversity of Washington · US

Funding

UNIVERSITY OF ROCHESTER'S RESEARCH ASSOCIATE ORGANIZATIONUL1RR024160 · NCRR · UNIVERSITY OF ROCHESTER · PI PEARSON, THOMAS ARTHUR · 2006 to 2011
$38.7M
The Pathogenesis of Facioscapulohumeral Muscular DystrophyP01NS069539 · NINDS · FRED HUTCHINSON CANCER RESEARCH CENTER · PI TAPSCOTT, STEPHEN J · 2010 to 2019
$12.3M
MYOTONIC DYSTROPHY LOCUS CONTROLR01AR045203 · NIAMS · FRED HUTCHINSON CANCER RESEARCH CENTER · PI TAPSCOTT, STEPHEN J · 1998 to 2025
$9.4M
Cellular and Molecular Biology of Childhood DiseaseK12HD043376 · NICHD · UNIVERSITY OF WASHINGTON · PI STAPLETON, FIELDING BRUDER · 2003 to 2012
$3.3M
NCRR NIH HHS UL1 RR024160NIAMS NIH HHS R01 AR045203NIAMS NIH HHS R01AR045203NICHD NIH HHS K12 HD043376NICHD NIH HHS U5K12HD043376-08NINDS NIH HHS P01 NS069539NINDS NIH HHS P01NS069539
6 · The paper itself

Abstract

Facioscapulohumeral dystrophy (FSHD) is one of the most common inherited muscular dystrophies. The causative gene remains controversial and the mechanism of pathophysiology unknown. Here we identify genes associated with germline and early stem cell development as targets of the DUX4 transcription factor, a leading candidate gene for FSHD. The genes regulated by DUX4 are reliably detected in FSHD muscle but not in controls, providing direct support for the model that misexpression of DUX4 is a causal factor for FSHD. Additionally, we show that DUX4 binds and activates LTR elements from a class of MaLR endogenous primate retrotransposons and suppresses the innate immune response to viral infection, at least in part through the activation of DEFB103, a human defensin that can inhibit muscle differentiation. These findings suggest specific mechanisms of FSHD pathology and identify candidate biomarkers for disease diagnosis and progression.

Indexed as

Gene Expression RegulationApoptosisbeta-DefensinsBiomarkersBlotting, WesternCell DifferentiationCell ProliferationCells, CulturedChromatin ImmunoprecipitationGene Expression ProfilingGerm CellsHomeodomain ProteinsHumansImmunoenzyme TechniquesLuciferasesMuscle, Skeletalbeta-DefensinsBiomarkersDEFB1 protein, humanDUX4L1 protein, humanHomeodomain ProteinsLuciferasesRetroelementsRNA, Messenger

Identifiers

PMID22209328
PMCPMC3264808
OpenAlexW2081357269

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.