Evidence map›Paper›PMID 22207904›Full record

ArticleInternational journal for numerical methods in biomedical engineering2011

Partial differential equation transform - Variational formulation and Fourier analysis.

Yang Wang, Guo-Wei Wei, Siyang Yang

Abstract read
In one paragraph

Article in International journal for numerical methods in biomedical engineering, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Article
  2. Geometric algebra generation of molecular surfaces.Journal of the Royal Society, Interface · 2022
    Article
  3. Hyperspectral chemical plume detection algorithms based on multidimensional iterative filtering decomposition.Philosophical transactions. Series A, Mathematical, physical, and engineering sciences · 2016
    Article
  4. Object-oriented Persistent Homology.Journal of computational physics · 2016
    Article
  5. Multidimensional persistence in biomolecular data.Journal of computational chemistry · 2015
    Article
  6. Segmentation of biomedical images using active contour model with robust image feature and shape prior.International journal for numerical methods in biomedical engineering · 2014
    Article
  7. Article
  8. Article
  9. Article
  10. Geometric modeling of subcellular structures, organelles, and multiprotein complexes.International journal for numerical methods in biomedical engineering · 2012
    Article
  11. Biomolecular surface construction by PDE transform.International journal for numerical methods in biomedical engineering · 2012
    Article
  12. Mode decomposition evolution equations.Journal of scientific computing · 2012
    Article
  13. Selective Extraction of Entangled Textures via Adaptive PDE Transform.International journal of biomedical imaging · 2012
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Yang Wang
Guo-Wei Wei
Siyang Yang

Funding

Collaborative research: Geometric flow approach to implicit solvation modelingR01GM090208 · NIGMS · MICHIGAN STATE UNIVERSITY · PI WEI, GUOWEI · 2009 to 2014
$1.3M
NIGMS NIH HHS R01 GM090208
6 · The paper itself

Abstract

Nonlinear partial differential equation (PDE) models are established approaches for image/signal processing, data analysis and surface construction. Most previous geometric PDEs are utilized as low-pass filters which give rise to image trend information. In an earlier work, we introduced mode decomposition evolution equations (MoDEEs), which behave like high-pass filters and are able to systematically provide intrinsic mode functions (IMFs) of signals and images. Due to their tunable time-frequency localization and perfect reconstruction, the operation of MoDEEs is called a PDE transform. By appropriate selection of PDE transform parameters, we can tune IMFs into trends, edges, textures, noise etc., which can be further utilized in the secondary processing for various purposes. This work introduces the variational formulation, performs the Fourier analysis, and conducts biomedical and biological applications of the proposed PDE transform. The variational formulation offers an algorithm to incorporate two image functions and two sets of low-pass PDE operators in the total energy functional. Two low-pass PDE operators have different signs, leading to energy disparity, while a coupling term, acting as a relative fidelity of two image functions, is introduced to reduce the disparity of two energy components. We construct variational PDE transforms by using Euler-Lagrange equation and artificial time propagation. Fourier analysis of a simplified PDE transform is presented to shed light on the filter properties of high order PDE transforms. Such an analysis also offers insight on the parameter selection of the PDE transform. The proposed PDE transform algorithm is validated by numerous benchmark tests. In one selected challenging example, we illustrate the ability of PDE transform to separate two adjacent frequencies of sin(x) and sin(1.1x). Such an ability is due to PDE transform's controllable frequency localization obtained by adjusting the order of PDEs. The frequency selection is achieved either by diffusion coefficients or by propagation time. Finally, we explore a large number of practical applications to further demonstrate the utility of proposed PDE transform.

Identifiers

PMID22207904
PMCPMC3246290

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.