Evidence map›Paper›PMID 22205814›Full record

ArticleJournal of clinical microbiology2012

Comprehensive multicenter evaluation of a new line probe assay kit for identification of Mycobacterium species and detection of drug-resistant Mycobacterium tuberculosis.

Satoshi Mitarai, Seiya Kato, Hideo Ogata, Akio Aono, Kinuyo Chikamatsu, Kazue Mizuno, Emiko Toyota, Akiko Sejimo, Katsuhiro Suzuki, Shiomi Yoshida and 10 more

Open access · greenAbstract readEvaluation StudyMulticenter Study
In one paragraph

Article in Journal of clinical microbiology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed, 1 pooled it
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 1 synthesis or guideline pooled it, 63 citations in OpenAlex.

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  19. Frontiers in medicine · 2018
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 8 institutions in 1 country.

Satoshi MitaraiResearch Institute of Tuberculosis, Japan Anti-Tuberculosis Association, Tokyo, Japan.
Seiya Kato
Hideo Ogata
Akio Aono
Kinuyo Chikamatsu
Kazue Mizuno
Emiko Toyota
Akiko Sejimo
Katsuhiro Suzuki
Shiomi Yoshida
Takefumi Saito
Ataru Moriya
Akira Fujita
Shuko Sato
Tomoshige Matsumoto
Hiromi Ano
Toshinori Suetake
Yuji Kondo
Teruo Kirikae
Toru Mori
Japan Anti Tuberculosis Association · JPIbarakihigashi National Hospital · JPNational Kinki Chuo Hospital for Chest Disease · JPNipro (Japan) · JPOsaka Prefectural Medical Center · JPTokyo Metropolitan Tama Medical Center · JPTokyo National Hospital · JPNational Center for Global Health and Medicine · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We evaluated a new line probe assay (LiPA) kit to identify Mycobacterium species and to detect mutations related to drug resistance in Mycobacterium tuberculosis. A total of 554 clinical isolates of Mycobacterium tuberculosis (n = 316), Mycobacterium avium (n = 71), Mycobacterium intracellulare (n = 51), Mycobacterium kansasii (n = 54), and other Mycobacterium species (n = 62) were tested with the LiPA kit in six hospitals. The LiPA kit was also used to directly test 163 sputum specimens. The results of LiPA identification of Mycobacterium species in clinical isolates were almost identical to those of conventional methods. Compared with standard drug susceptibility testing results for the clinical isolates, LiPA showed a sensitivity and specificity of 98.9% and 97.3%, respectively, for detecting rifampin (RIF)-resistant clinical isolates; 90.6% and 100%, respectively, for isoniazid (INH) resistance; 89.7% and 96.0%, respectively, for pyrazinamide (PZA) resistance; and 93.0% and 100%, respectively, for levofloxacin (LVX) resistance. The LiPA kit could detect target species directly in sputum specimens, with a sensitivity of 85.6%. Its sensitivity and specificity for detecting RIF-, PZA-, and LVX-resistant isolates in the sputum specimens were both 100%, and those for detecting INH-resistant isolates were 75.0% and 92.9%, respectively. The kit was able to identify mycobacterial bacilli at the species level, as well as drug-resistant phenotypes, with a high sensitivity and specificity.

Indexed as

Antitubercular AgentsBacteriological TechniquesDrug Resistance, BacterialHumansMolecular Diagnostic TechniquesMycobacterium tuberculosisSensitivity and SpecificityTuberculosis, Multidrug-ResistantAntitubercular Agents

Identifiers

PMID22205814
PMCPMC3295174
OpenAlexW2132535876

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.