Evidence map›Paper›PMID 22205731›Full record

ArticleJournal of virology2012

Self-assembly of viral capsid protein and RNA molecules of different sizes: requirement for a specific high protein/RNA mass ratio.

Ruben D Cadena-Nava, Mauricio Comas-Garcia, Rees F Garmann, A L N Rao, Charles M Knobler, William M Gelbart

Erratum issuedOpen access · bronzeAbstract read
In one paragraph

Article in Journal of virology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 88 papers.

0numbers the graph read from it
0cells of the map it votes in
88citing papers in PubMed
12.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

88 citing papers in PubMed, 189 citations in OpenAlex.

  1. Review
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  13. Molecular pharmaceutics · 2024
    Article
  14. Article
  15. Article
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  17. Review
  18. Plant Virus-Like Particles for RNA Delivery.Methods in molecular biology (Clifton, N.J.) · 2024
    Article
  19. Article
  20. Article

28 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Ruben D Cadena-NavaDepartment of Chemistry and Biochemistry University of California, Los Angeles, California, USA.
Mauricio Comas-Garcia
Rees F Garmann
A L N Rao
Charles M Knobler
William M Gelbart
University of California, Los Angeles · US

Funding

Interconnectivity between genome packagaing and other viral functionsR21AI082301 · NIAID · UNIVERSITY OF CALIFORNIA RIVERSIDE · PI RAO, A L · 2009 to 2010
$415k
NIAID NIH HHS 1R21AI82301NIAID NIH HHS R21 AI082301
6 · The paper itself

Abstract

Virus-like particles can be formed by self-assembly of capsid protein (CP) with RNA molecules of increasing length. If the protein "insisted" on a single radius of curvature, the capsids would be identical in size, independent of RNA length. However, there would be a limit to length of the RNA, and one would not expect RNA much shorter than native viral RNA to be packaged unless multiple copies were packaged. On the other hand, if the protein did not favor predetermined capsid size, one would expect the capsid diameter to increase with increase in RNA length. Here we examine the self-assembly of CP from cowpea chlorotic mottle virus with RNA molecules ranging in length from 140 to 12,000 nucleotides (nt). Each of these RNAs is completely packaged if and only if the protein/RNA mass ratio is sufficiently high; this critical value is the same for all of the RNAs and corresponds to equal RNA and N-terminal-protein charges in the assembly mix. For RNAs much shorter in length than the 3,000 nt of the viral RNA, two or more molecules are assembled into 24- and 26-nm-diameter capsids, whereas for much longer RNAs (>4,500 nt), a single RNA molecule is shared/packaged by two or more capsids with diameters as large as 30 nm. For intermediate lengths, a single RNA is assembled into 26-nm-diameter capsids, the size associated with T=3 wild-type virus. The significance of these assembly results is discussed in relation to likely factors that maintain T=3 symmetry in vivo.

Indexed as

Virus AssemblyBromovirusCapsid ProteinsFabaceaePlant DiseasesRNA, ViralCapsid ProteinsRNA, Viral

Identifiers

PMID22205731
PMCPMC3302347
OpenAlexW1966225171

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.