Evidence map›Paper›PMID 22205657›Full record

ArticleClinical and vaccine immunology : CVI2012

Human endogenous retrovirus K(HML-2) Gag- and Env-specific T-cell responses are infrequently detected in HIV-1-infected subjects using standard peptide matrix-based screening.

R Brad Jones, Vivek M John, Diana V Hunter, Eric Martin, Shariq Mujib, Vesna Mihajlovic, Peter C Burgers, Theo M Luider, Gabor Gyenes, Neil C Sheppard and 7 more

Open access · diamondAbstract read
In one paragraph

Article in Clinical and vaccine immunology : CVI, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.9field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 16 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 6 institutions in 3 countries.

R Brad JonesDepartment of Immunology, University of Toronto, Toronto, Ontario, Canada. brad.jones@utoronto.ca
Vivek M John
Diana V Hunter
Eric Martin
Shariq Mujib
Vesna Mihajlovic
Peter C Burgers
Theo M Luider
Gabor Gyenes
Neil C Sheppard
Devi Sengupta
Ravi Tandon
Feng-Yun Yue
Erika Benko
Colin Kovacs
Douglas F Nixon
Mario A Ostrowski
St. Michael's Hospital · CAUniversity of California, San Francisco · USErasmus University Rotterdam · NLMaple Leaf Medical Clinic · CAUniversity of Toronto · CAPfizer (United States) · US

Funding

Virology CoreP30AI027763 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI STEVEN Grant DEEKS · 1988 to 2026
$93.6M
Human Endogenous Retroelements in HIV ImmunopathogenesisR01AI076059 · NIAID · WEILL MEDICAL COLL OF CORNELL UNIV · PI NIXON, DOUGLAS F · 2009 to 2017
$3.9M
An endogenous retroelement vaccine against HIV-1R56AI084113 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI NIXON, DOUGLAS F · 2009 to 2009
$425k
NIAID NIH HHS AI076059NIAID NIH HHS AI084113NIAID NIH HHS P30 AI027763NIAID NIH HHS R01 AI076059NIAID NIH HHS R56 AI084113
6 · The paper itself

Abstract

T-cell responses to human endogenous retrovirus (HERV) K(HML-2) Gag and Env were mapped in HIV-1-infected subjects using 15 mer peptides. Small peptide pools and high concentrations were used to maximize sensitivity. In the 23 subjects studied, only three bona fide HERV-K(HML-2)-specific responses were detected. At these high peptide concentrations, we detected false-positive responses, three of which were mapped to an HIV-1 Gag peptide contaminant. Thus, HERV-K(HML-2) Gag- and Env-specific T-cell responses are infrequently detected by 15 mer peptide mapping.

Indexed as

Endogenous RetrovirusesGene Products, envGene Products, gagHIV-1HIV InfectionsHumansPeptide MappingRNA, ViralT-LymphocytesGene Products, envGene Products, gagRNA, Viral

Identifiers

PMID22205657
PMCPMC3272926
OpenAlexW2163178976

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.