Evidence map›Paper›PMID 22205655›Full record

ArticleJournal of the National Cancer Institute2012

YB-1, the E2F pathway, and regulation of tumor cell growth.

Annette Lasham, Weini Samuel, Helen Cao, Rachna Patel, Reena Mehta, J Lewis Stern, Glen Reid, Adele G Woolley, Lance D Miller, Michael A Black and 3 more

Open access · bronzeAbstract read
In one paragraph

Article in Journal of the National Cancer Institute, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 63 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
63citing papers in PubMed, 1 pooled it
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

63 citing papers in PubMed, 1 synthesis or guideline pooled it, 129 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Stress response regulation of mRNA translation: Implications for antioxidant enzyme expression in cancer.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Review
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  11. YB-1 activating cascades as potential targets in KRAS-mutated tumors.Strahlentherapie und Onkologie : Organ der Deutschen Rontgengesellschaft ... [et al] · 2023
    Review
  12. Article
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  17. The Diverse Analysis Identifies MutatedWorld journal of oncology · 2022
    Article
  18. Article
  19. Review
  20. Article

3 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 7 institutions in 3 countries.

Annette LashamDepartment of Molecular Medicine and Pathology, School of Medical Sciences, University of Auckland, Auckland, New Zealand. a.lasham@auckland.ac.nz
Weini Samuel
Helen Cao
Rachna Patel
Reena Mehta
J Lewis Stern
Glen Reid
Adele G Woolley
Lance D Miller
Michael A Black
Andrew N Shelling
Cristin G Print
Antony W Braithwaite
Children's Medical Research Institute · AUUniversity of Auckland · NZWake Forest University · USCSL (Australia) · AUGenesis Laboratories · USUniversity of Otago · NZUniversity of Sydney · AU

Funding

TERT Promoter Mutations and Telomerase Reactivation in Cancer CellsR01GM099705 · NIGMS · UNIVERSITY OF COLORADO · PI CECH, THOMAS ROBERT · 2012 to 2019
$1.4M
NIGMS NIH HHS R01 GM099705
6 · The paper itself

Abstract

backgroundY-box binding factor 1 (YB-1) has been associated with prognosis in many tumor types. Reduced YB-1 expression inhibits tumor cell growth, but the mechanism is unclear.

methodsYB-1 mRNA levels were compared with tumor grade and histology using microarray data from 771 breast cancer patients and with disease-free survival and distant metastasis-free survival using data from 375 of those patients who did not receive adjuvant therapy. Microarrays were further searched for genes that had correlated expression with YB-1 mRNA. Small interfering RNA (siRNA) was used to study the effects of reduced YB-1 expression on growth of three tumor cell lines (MCF-7 breast, HCT116 colon, and A549 lung cancer cells), on tumorigenesis by A549 cells in nude mice, and on global transcription in the three cancer cell lines. Reporter gene assays were used to determine whether YB-1 siRNAs affected the expression of E2F1, and chromatin immunoprecipitation was used to determine whether YB-1 bound to various E2F promoters as well as E2F1-regulated promoters. All P values were from two-sided tests.

resultsYB-1 levels were elevated in more aggressive tumors and were strongly associated with poor disease-free survival and distant metastasis-free survival. YB-1 expression was often associated with the expression of genes with E2F sites in their promoters. Cells expressing YB-1 siRNA grew substantially more slowly than control cells and formed tumors less readily in nude mice. Transcripts that were altered in cancer cell lines with YB-1 siRNA included 32 genes that are components of prognostic gene expression signatures. YB-1 regulated expression of an E2F1 promoter-reporter construct in A549 cells (eg, relative E2F1 promoter activity with control siRNA = 4.04; with YB-1 siRNA = 1.40, difference= -2.64, 95% confidence interval = -3.57 to -1.71, P < .001) and bound to the promoters of several well-defined E2F1 target genes.

conclusionYB-1 expression is associated with the activity of E2F transcription factors and may control tumor cell growth by this mechanism.

Indexed as

Gene SilencingProtein Array AnalysisAdultAgedAnimalsBlotting, WesternBreast NeoplasmsCell Line, TumorCell ProliferationChromatin ImmunoprecipitationComputational BiologyE2F1 Transcription FactorFemaleGene Expression Regulation, NeoplasticGenes, ReporterHumansE2F1 Transcription FactorRNA, MessengerRNA, Small InterferingY-Box-Binding Protein 1YBX1 protein, human

Identifiers

PMID22205655
PMCPMC4817305
OpenAlexW2109573880

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.