Evidence map›Paper›PMID 22205426›Full record

ArticlePlanta2012

Induction of potato steroidal glycoalkaloid biosynthetic pathway by overexpression of cDNA encoding primary metabolism HMG-CoA reductase and squalene synthase.

Idit Ginzberg, Muddarangappa Thippeswamy, Edna Fogelman, Ufuk Demirel, Alice M Mweetwa, James Tokuhisa, Richard E Veilleux

Abstract read
PubMed Publisher
In one paragraph

Article in Planta, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
2.3field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 59 citations in OpenAlex.

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  7. Sustainable Use of Bioactive Compounds fromMolecules (Basel, Switzerland) · 2021
    Review
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  15. Genome diversity of tuber-bearingProceedings of the National Academy of Sciences of the United States of America · 2017
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 5 countries.

Idit GinzbergInstitute of Plant Sciences, ARO, the Volcani Center, 50250 Bet Dagan, Israel. iditgin@volcani.agri.gov.il
Muddarangappa Thippeswamy
Edna Fogelman
Ufuk Demirel
Alice M Mweetwa
James Tokuhisa
Richard E Veilleux
Agricultural Research Organization · ILVirginia Tech · USUniversity of Zambia · ZM

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Potato steroidal glycoalkaloids (SGAs) are toxic secondary metabolites whose total content in tubers must be regulated. SGAs are biosynthesized by the sterol branch of the mevalonic acid/isoprenoid pathway. In a previous study, we showed a correlation between SGA levels and the abundance of transcript coding for HMG-CoA reductase 1 (HMG1) and squalene synthase 1 (SQS1) in potato tissues and potato genotypes varying in SGA content. Here, Solanum tuberosum cv. Desirée (low SGA producer) was transformed with a gene construct containing the coding region of either HMG1 or SQS1 of Solanum chacoense Bitt. clone 8380-1, a high SGA producer. SGA levels in transgenic HMG-plants were either greater than (in eight of 14 plants) or no different from untransformed controls, whereas only four of 12 SQS-transgenics had greater SGA levels than control, as determined by HPLC. Quantitative real-time PCR was used to estimate relative steady-state transcript levels of isoprenoid-, steroid-, and SGA-related genes in leaves of the transgenic plants compared to nontransgenic controls. HMG-transgenic plants exhibited increased transcript accumulation of SQS1, sterol C24-methyltransferase type1 (SMT1), and solanidine glycosyltransferase 2 (SGT2), whereas SQS-transgenic plants, had consistently lower transcript levels of HMG1 and variable SMT1 and SGT2 transcript abundance among different transgenics. HMG-transgenic plants exhibited changes in transcript accumulation for some sterol biosynthetic genes as well. Taken together, the data suggest coordinated regulation of isoprenoid metabolism and SGA secondary metabolism.

Indexed as

AlkaloidsBiosynthetic PathwaysChromatography, High Pressure LiquidDNA, ComplementaryFarnesyl-Diphosphate FarnesyltransferaseGene Expression Regulation, PlantGenes, PlantHydroxymethylglutaryl CoA ReductasesPhytosterolsPlant LeavesPlants, Genetically ModifiedRNA, MessengerSequence Homology, Nucleic AcidSolanineSolanum tuberosumAlkaloidsalpha-chaconinealpha-solanineDNA, ComplementaryFarnesyl-Diphosphate FarnesyltransferaseHydroxymethylglutaryl CoA ReductasesPhytosterolsRNA, MessengerSolanine

Identifiers

PMID22205426
OpenAlexW2009051558

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.